References - Publications

Listing of scientific publications referencing MO BIO products.

10196 - UltraClean® -htp 96 Well Microbial DNA Kit - View Product

Zhang, L., Srinivasan, U., Marrs, C.F., Ghosh, D., Gilsdorf, J.R., Foxman, B. Library On A Slide For Bacterial Comparative Genomics. BMC Microbiology. 4(12) (2004).

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Dandie, C.E., Miller, M.N., Burton, D.L., Zebarth, B.J., Trevors, J.T., Goyer, C. Nitric Oxide Reductase-Targeted Real-Time PCR Quantification Of Denitrifier Populations In Soil. Applied Environmental Microbiology. 73(13): 4250-4258 (2007).

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Saar, I., Poldmaa, K., and Koljalg, U. The Phylogeny and Taxonomy of Genera Cystoderma and Cystodermella (Agaricales) Based on Nuclear ITS and LSU Sequences . Mycological Pregress. 8(1): 59-73 (2009).
Vukovi, J., Ruitenberg, M.J., Roet, K., Fransse, E., Arulpragasam, A., Sasaki, T., Verhaagen, J., Harvey A.R., Busfield, S.J., and Plant, G.W. The Glycoprotein Fibulin-3 Regulates Morphology and Motility of Olfactory Ensheathing Cells In Vitro. Glia. 57(4): 424-443 (2009).
Boga, J.A., Melón, S., Nicieza, I., de Diego, I., Villar, M., Parra, F., de Oña, M. Etiology Of Sporadic Cases Of Pediatric Acute Gastroenteritis In Asturias, Spain, and Genotyping and Characterization Of Norovirus Strains Involved. Journal of Clinical Microbiology. 42(6): 2668-2674 (2004).
Clarke, B.R., Cuthbertson, L., Whitfield, C. Nonreducing Terminal Modifications Determine The Chain Length Of Polymannose O Antigens Of Escherichia coli and Couple Chain Termination To Polymer Export Via An ATP-Binding Cassette Transporter. The Journal of Biological Chemistry. 279(34): 35709-35718 (2004).
Fernandez, P., Carretero, J., Medina, P.P., Jimenez, A.I., Rodriguez-Perales, S., Paz, M.F., Cigudosa, J.C., Esteller, M., Lombardia, L., Morente, M., Sanchez-Verde, L., Sotelo, T., Sanchez-Cespedes, M. Distinctive Gene Expression Of Human Lung Adenocarcinomas Carrying LKB1 Mutations. Oncogene. 23(29): 5084-5091 (2004).
Hara, T., Ishida, H., Raziuddin, R., Dorkhom, S., Kamijo, K., Miki, T. Novel Kelch-Like Protein, KLEIP, Is Involved In Actin Assembly At Cell-Cell Contact Sites Of Madin-Darby Canine Kidney Cells. Molecular Biology of the Cell. 15(3): 1172-1184 (2004).
Kaniuk, N.A., Vinogradov, E., Li, J., Monteiro, M.A., C. Whitfield, C. Chromosomal and Plasmid-encoded Enzymes Are Required For Assembly Of The R3-type Core Oligosaccharide In The Lipopolysaccharide Of Escherichia coli O157:H7. The Journal of Biological Chemistry. 279(30): 31237-31250 (2004).
Kiefel, B.R., Gilson, P.R., Beech, P.L. Diverse Eukaryotes Have Retained Mitochondrial Homologues Of The Bacterial Division Protein FtsZ. Protist. 155(1): 105-115 (2004).
Miller, W.L., Wenzel, C.Q., Daniels, C., Larocque, S., Brisson, J.R., Lam, J.S. Biochemical Characterization Of WbpA, A UDP-N-acetyl-D-glucosamine 6-Dehydrogenase Involved In O-antigen Biosynthesis In Pseudomonas aeruginosa PAO1. The Journal of Biological Chemistry. 279(36): 37551-37558 (2004).
Summerscales, J.E., Josephy, P.D. Human Acetyl CoA: Arylamine N-Acetyltransferase Variants Generated By Random Mutagenesis. Molecular Pharmacology. 65(1): 220-226 (2004).
Zhang, Y., Champagne, N., Beitel, L.K., Goodyer, C.G., Trifiro, M., LeBlanc, A. Estrogen and Androgen Protection Of Human Neurons Against Intracellular Amyloid Beta_1-42 Toxicity Through Heat Shock Protein 70. Journal of Neuroscience. 24(23): 5315-5321 (2004).
Adamson, T., Price, D. Cotranscriptional Processing Of Drosophila Histone mRNAs. Molecular and Cellular Biology. 23(12): 4046-4055 (2003).
Gomes, N.C.M., Fagbola, O., Costa, R., Rumjanek, N.G., Buchner, A., Mendona-Hagler, L., Smalla, K. Dynamics Of Fungal Communities In Bulk and Maize Rhizosphere Soil In The Tropics. Applied and Environmental Microbiology. 69(7): 3758-3766 (2003).
Krüger, R., Filutowicz, M. pi Protein- and ATP-Dependent Transitions From 'Closed' To 'Open' Complexes At The gamma ori Of Plasmid R6K. Nucleic Acids Research. 31(20): 5993-6003 (2003).
Lebrecht, D., Setzer, B., Ketelsen, U.P., Haberstroh, J., Walker, U.A. Time-Dependent and Tissue-Specific Accumulation Of mtDNA and Respiratory Chain Defects In Chronic Doxorubicin Cardiomyothapy. Circulation. 108(19): 2423-2429 (2003).
Matthias, K., Kirchhoff, F., Seifert, G., Hüttmann, K., Matyash, M., Kettenmann, H., Steinhäuser, C. Segregated Expression Of AMPA-Type Glutamate Receptors and Glutamate Transporters Defines Distinct Astrocyte Populations In The Mouse Hippocampus. Journal of Neuroscience. 23(5): 1750-1758 (2003).
Partridge, S.R., Hall, R.M. In34, A Complex In5 Family Class 1 Integron Containing orf513 and dfrA10. Antimicrobial Agents and Chemotherapy. 47(1): 342-349 (2003).
Partridge, S.R., Hall, R.M. The IS1111 Family Members IS4321 and IS5075 Have Subterminal Inverted Repeats and Target the Terminal Inverted Repeats Of Tn21 Family Transposons. Journal of Bacteriology. 185(21): 6371-6384 (2003).
Rios-Hernandez, L.A., Gieg, L.M., Suflita, J.M. Biodegradation Of An Alicyclic Hydrocarbon By A Sulfate-Reducing Enrichment From A Gas Condensate-Contaminated Aquifer. Applied and Environmental Microbiology. 69(1): 434-443 (2003).
Rodríguez-Antona, C., Bort, R., Jover, R., Tindberg, N., Ingelman-Sundberg, M., Gómez-Lechón, M.J., Castell, J.V. Transcriptional Regulation Of Human CYP3A4 Basal Expression By CCAAT Enhancer-Binding Protein alpha and Hepatocyte Nuclear Factor-3 gamma. Molecular Pharmacology. 63(5): 1180-1189 (2003).
Seguritan, V., Feng, I.W., Rohwer, F., Swift, M., Segall, A.M. Genome Sequences Of Two Closely Related Vibrio parahaemolyticus Phages, VP16T and VP16C. Journal of Bacteriology. 185(21): 6434-6447 (2003).
Vellani, T., Myers, R. Bacteriophage SPP1 Chu Is An Alkaline Exonuclease In The SynExo Family Of Viral Two-Component Recombinases. Journal of Bacteriology. 185(8): 2465-2474 (2003).
Zhang, Y., Hong, Y., Bounhar, Y., Blacker, M., Roucou, X., Tounekti, O., Vereker, E., Bowers, W.J., Federoff, H.J., Goodyer, C.G., LeBlanc, A. p75 Neurotrophin Receptor Protects Primary Cultures Of Human Neurons Against Extracellular Amyloid Beta Peptide Cytotoxicity. Journal of Neuroscience. 23(19): 7385-7394(2003).
Brofft, J.E., McArthur, J.V., Shimkets, L.J. Recovery Of Novel Bacterial Diversity From A Forested Wetland Impacted By Reject Coal. Environmental Microbiology. 4(11): 764-769 (2002).
Chan, R., Baldwin, B.G., Ornduff, R. Cryptic Goldfields: A Molecular Phylogenetic Reinvestigation Of Lasthenia californica sensu lato and Close Relatives (Compositae: Heliantheae sensu lato). American Journal of Botany. 89(7): 1103-1112 (2002).
Huang, Y.C., Colman, R.F. Evaluation By Mutagenesis Of The Roles Of His³⁰⁹, His³¹⁵, and His³¹⁹ In The Coenzyme Site Of Pig Heart NADP-Dependent Isocitrate Dehydrogenase. Biochemistry. 41(17): 5637-5643 (2002).
McCormick, S., Alexander, N. Fusarium Tri8 Encodes A Trichothecene C-3 Esterase. Applied and Environmental Microbiology. 68(6): 2959-2964 (2002).
Potaman, V.N., Lushnikov, A.Y., Sinden, R.R., Lyubchenko, Y.L. Site-Specific Labeling Of Supercoiled DNA At The A+T Rich Sequences. Biochemistry. 41(44): 13198-13206 (2002).
Soldatenkov, V.A., Chasovskikh, S., Potaman, V.N., Trofimova, I., Smulson, M.E., Dritschilo, A. Transcriptional Repression By Binding Of Poly(ADP-ribose) Polymerase To Promoter Sequences. The Journal of Biological Chemistry. 277(1): 665-670 (2002).
Cervelli, M., Cona, A., Angelini, R., Polticelli, F., Federico, R., Mariottini, P. A Barley Polyamine Oxidase Isoform With Distinct Structural Features and Subcellular Localization. European Journal of Biochemistry. 268(13): 3816-3830 (2001).
Goodin, M.M., Austin, J., Tobias, R., Fujita, M., Morales, C., Jackson, A.O. Interactions and Nuclear Import Of The N and P Proteins Of Sonchus Yellow Net Virus, A Plant Nucleorhabdovirus. Journal of Virology. 75(19): 9393-9406 (2001).
Grigg, M., Boothroyd, J. C. Rapid Identification Of Virulent Type I Strains Of The Protozoan Pathogen Toxoplasma gondii By PCR-Restriction Fragment Length Polymorphism Analysis At The B1 Gene. Journal of Clinical Microbiology. 39(1): 398-400 (2001).
Grigg, M.E., Bonnefoy, S., Hehl, A.B., Suzuki, Y., Boothroyd, J.C. Success and Virulence In Toxoplasma As The Result Of Sexual Recombination Between Two Distinct Ancestries. Science. 294(5540): 161-165 (2001).
Ito, N., Takayama, M., Yamada, K. Sugiyama, M., Minamoto, N. Rescue Of Rabies Virus From Cloned cDNA and Identification Of The Pathogenicity-Related Gene: Glycoprotein Gene Is Associated With Virulence For Adult Mice. Journal of Virology. 75(19): 9121-9128 (2001).
Kanamaru, K., Nagashima, A., Fujiwara, M., Shimada, H., Shirano, Y., Nakabayashi, K., Shibata, D., Tanaka, K., Takahashi, H. An Arabidopsis Sigma Factor (SIG2)-Dependent Expression Of Plastid-Encoded tRNAs In Chloroplasts. Plant Cell Physiology. 42(10): 1034-1043 (2001).
Krüger, R., Konieczny, I., Filutowicz, M. Monomer/Dimer Ratios Of Replication Protein Modulate The DNA Strand-Opening In A Replication Origin. Journal of Molecular Biology. 306(5): 945-955 (2001).
Ohyama, K., Enn, P., Uchide, N., Bessho, T., Yamakawa, T. Improvement of Separation Method Of Fragmented DNA From An Apoptotic Cell DNA Sample For The Quantification Using Agarose Gel Electrophoresis. Biological & Pharmaceutical Bulletin. 24(4): 342-346 (2001).
Oussatcheva, E.A., Hashem, V.I., Zou, Y., Sinden, R.R., Potaman, V.N. Involvement Of The Nucleotide Excision Repair Protein UvrA In Instability Of CAG^*CTG Repeat Sequences In Escherichia coli. The Journal of Biological Chemistry. 276(33): 30878-30884 (2001).
Desjardins, A.E., Bai, G., Plattner, R.D., Proctor, R.H. Analysis Of Aberrant Virulence Of Gibberella zeae Following Transformation-Mediated Complementation Of A Trichothecene-Deficient (Tri5) Mutant. Microbiology. 146: 2059-2068 (2000).
Grodsky, N.B., Soundar, S., Colman, R.F. Chloroplast Targeting, Distribution and Transcriptional Fluctuation Of AtMinD1, a Eubacteria-Type Factor Critical For Chloroplast Division. Plant Cell Physiology. 41(10): 1119-1128 (2000).
Li, Y., Pursell, Z.F., Linn, S. Identification and Cloning Of Two Histone Fold Motif-Containing Subunits Of HeLA DNA Polymerase. The Journal of Biological Chemistry. 275(30): 23247-23252 (2000).
Shlyakhtenko, L., Potaman, V., Sinden, R., Gall, A. Y. Lyubchenko, Y. Structure and Dynamics Of Three-way DNA Junctions: Atomic Force Microscopy Studies. Nucleic Acids Research. 28(18): 3472-3477 (2000).
Soundar, S., Danek, B.L., Colman, R.F. Identification By Mutagenesis Of Arginines In The Substrate Binding Site Of The Porcine NADP-dependent Isocitrate Dehydrogenase. The Journal of Biological Chemistry. 275(8): 5606-5612 (2000).
Sugino, H., Terakawa, Y., Yamasaki, A., Nakamura, K., Higuchi, Y., Matsubara, J., Kuniyoshi, H., Ikegami, S. Molecular Characterization Of A Novel Nuclear Transglutaminase That Is Expressed During Starfish Embryogenesis. European Journal of Biochemistry. 269(7): 1957-1967 (2000).
Chauhan, M.S., Nadir, S., Bailey, T.L., Pryor, A.W., Butler, S.P., Notter, D.R., Velander, W.H., Gwazdauskas, F.C. Bovine Follicular Dynamics, Oocyte Recovery, and Development Of Oocytes Microinjected With A Green Fluorescent Protein Construct. Journal of Dairy Science. 82(5): 918-926 (1999).
Johnson, E., Mincer, T., Schwab, H., Burgin, A., Helinski, D. Plasmid RK2 ParB Protein: Purification and Nuclease Properties. Journal of Bacteriology. 181(19): 6010-6018 (1999).
Dojka, M.A., Hugenholtz, P., Haack, S.K., Pace, N.R. Microbial Diversity In A Hydrocarbon- and Chlorinated-Solvent-Contaminated Aquifer Undergoing Intrinsic Bioremediation. Applied and Environmental Microbiology. 64(10): 3869-3877 (1998).
Hugenholtz, P., Pitulle, C., Hershberger, K.L., Pace, N.R. Novel Division Level Bacterial Diversity In A Yellowstone Hot Spring. Journal of Bacteriology. 180(2): 366-376 (1998).
Peter, B.J., Ullsperger, C., Hiasa, H., Marians, K.J., Cozzarelli, N.R. The Structure Of Supercoiled Intermediates In DNA Replication. Cell. 94(6): 819-827 (1998).
Lees-Miller, J.P., Kondo, C., Wang, L., Duff, H.J. Electrophysiological Characterization Of An Alternatively Processed ERG K+ Channel In Mouse and Human Hearts. Circulation Research. 81(5): 719-726 (1997).
Li, Y., Asahara, H., Patel, V.S., Zhou, S., Linn, S. Purification, cDNA Cloning, and Gene Mapping Of The Small Subunit Of Human DNA Polymerase epsilon. The Journal of Biological Chemistry. 272(51): 32337-32344 (1997).

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Bui, C.T., Lambrinakos, A., Babon, J.J., Cotton, R.G. Chemical Cleavage Reactions Of DNA On Solid Support: Application In Mutation Detection. BMC Chemical Biology 3(1): 1 (2003).
Butchko, R.A., Plattner, R.D., Proctor, R.H. FUM13 Encodes a Short Chain Dehydrogenase/Reductase Required For C-3 Carbonyl Reduction During Fumonisin Biosynthesis In Gibberella moniliformis. Journal of Agricultral and Food Chemistry. 51(10): 3000-3006 (2003).

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Kaplan, C.W., Kitts, C.L. Bacterial Succession In A Petroleum Land Treatment Unit. Applied and Environmental Microbiology. 70(3): 1777-1786 (2004).
Kalivoda, K.A., Steenbergen, S.M., Vimr, E.R., Plumbridge, J. Regulation Of Sialic Acid Catabolism By The DNA Binding Protein NanR Escherichia coli. Journal of Bacteriology. 185(16): 4806-4815 (2003).
De Capdeville, G., Wilson, C.L., Beer, S.V., and Aist, J.R. Alternative Disease Control Agent Induce Resistance to Blue Mold in Harvested “Red Delicious” Apple Fruit. Biological Control. 900-908 (2002).

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Queipo-Ortuño, M.I., Tena, F., Colmenero, J.D., Morata, P. Comparison Of Seven Commercial DNA Extraction Kits For The Recovery Of Brucella DNA From Spiked Human Serum Samples Using Real-Time PCR. European Journal of Clinical Microbiology & Infectious. 27(2): 109-114 (2008).
Chang, J.H., Hampartzoumian, T, Everett, B., Lloyd, A., McCluskey, P.J., Wakefield, D. Changes In Toll-Like Receptor (TLR)-2 and TLR4 Expression and Function But Not Polymorphisms Are Associated With Acute Anterior Uveitis. Investigative Ophthalmology & Visual Science. 48(4): 1711-1717 (2007).
Valiante, S., Prisco, M., Capaldo, A., Zambrano, I., De Falco, M., Andreuccetti, P., Laforgia, V., Varano, L. Molecular Characterization and Gene Expression Of The Pituitary Adenylate Cyclase-Activating Polypeptide (PACAP) In The Lizard Brain. Brain Research. 1127: 66-75.(2007).
Navarro, E., Segura, J.C., Castaño, M.J., Solera, J. Use Of Real-Time Quantitative Polymerase Chain Reaction To Monitor The Evolution Of Brucella melitensis DNA Load During Therapy and Post-Therapy Follow-Up In Patients With Brucellosis. Clinical Infectious Diseases. 42(9): 1266-1273 (2006).
Parr, R.L., Dakubo, G.D., Crandall, K.A., Maki, J., Reguly, B., Aguirre, A., Wittock, R., Robinson, K., Alexander, J.S., Birch-Machin, M.A., Abdel-Malak, M., Frober, M.K., Diamandis, E.P., and Thayer, R.E. Somatic Mitochondrial DNA Mutations in Prostate Cancer and Normal Appearing Adjacent Glands in Comparison to Age-Matched Prostate Samples without Malignant Histology. Journal of Molecular Diagnostics. 8(3): 312-319 (2006).
Serý, O., Didden, W., Mikes, V., Pitelová, R., Znojil, V., Zvolský, P. The Association Between High-Activity COMT Allele and Alcoholism. Neuro Endocrinology Lett. 27(1-2):231-235 (2006).
Kasparovska, J., Hribkova, H., Hlouskova, R., Novotny, M., Glaskova, K., Simek, V., Mikes, V., Zvolsky, P., Sery, O. TaqI A Polymorphism Of The DRD2 Gene and Alcoholism In The Czech Republic. Ceska A Slovenska Psychiatrie. 99(1): 5-9 (2003).
Sery, O., Hladilova, R., Novotny, M., V. Znojil, V., P. Zvolsky, P. Polymorfismus genu pro IL-6 ma vztah k dispozicim k zavislosti na alkoholu. Ceska a Slovenska Psychiatrie. 99(4): 5-9 (2003
Sery, O., Hladilova, R., Novotny, M., Hribkova, H., Znojil, V., Zvolsky, P., Association Between -174 G/C Polymorphism Of Interleukin-6 Gene and Alcoholism. Acta Neuropsychiatrica. 15(5): 257-261 (2003).

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Beare, P.A., Unsworth, N., Andoh, M., Voth, D.E., Omsland, A., Gilk, S.D., Williams, K.P., Sobral, B.W., Kupko III, J.J., Porcella, S.F., Samuel, J.E., and Heinzen, R.A. Comparative Genomics Reveal Extensive Transposon-Mediated Genomic Plasticity and Diversity amoing Potential Effector Proteins within the Genus Coxiella. Infection and Immunity. 77(2): 642-656 (2009).
Chen, Y., Zhang, W., and Knabel, S.J. Multi-Virulence-Locus Sequence Typing Clarifies Epidemiology of Recent Listeriosis Outbreaks in the United States. Journal of Clinical Microbiology. 43(10): 5291-5294 (2009).
Dauphin, L.A., Moser, B.D., and Bowen, M.D. Evaluation of Five Commercial Nucleic Acid Extraction Kits for their Ability to Inactive Bacillus anthracis Spores and Comparison of DNA Yields from Spores and Spiked Environmental Samples. Journal of Microbiological Methods. 76(1): 30-37 (2009).
Hguyen, H.D.T., and Seifert, K.A. Description and DNA Barcoding of Three New Species of Leohumicola from South Africa and the United States. Persoonia. 21: 57-69 (2009).
Jacobs, M.R., Bajaksouzian, S., Bonomo, R.A., Good, C.E., Windau, A.R., Hujer, A.M., Massire, C., Melton, R., Blyn, L.B., Ecker, D.J., and Sampath, R. Occureneces, Distribution, and Origins of Streptococcus pneumoniae Serotype 6C, a recently Recongnized Serotype. Journal of Clinical Microbiology. 47(1): 64-72 (2009).
Miteva, V., Teacher, C., Sowers, T., and Brenchley, J. Comparison of the Microbial Diversity at Different Depths of the GISP2 Greenland Ice Core in Relationship to Deposition Climates. Environmental Microbiology. 11(3): 640-656 (2009).
Shnit-Orland, M. and Kushmaro, A. Coral Mucus-associated Bacteria: A Possible First Line of Defense. FEMS Microbiology Ecology. 67(3): 371-380 (2009).
Siristova, L., Melzoch, K., and Rezanka, T. Fatty Acids, Unusual Glycophospholipids and DNA Analyses of Thermophilic Bacteria Isolated from Hot Springs. Extremophiles. 13(1):101-109 (2009).
Podolich, O., Laschevskyy, V., Ovcharenko, L., Kozyrovska, N., and Pirttila, A.M. Methylobacterium sp. Resides in Unculturable State in Potato Tissues In vitro and becomes Culturable after Induction by Pseudomonas fluorescens IMG163. Journal of Applied Microbiology. 106(3): 728-737 (2009).
Wise, M.G., Siragusa, G.R., Plimbee, J., Healy, M., Cray, P.J., and Seal, B.S. Predicting Salmonella enterica Serotypes by Repetitive Sequence-based PCR. Journal of Microbiological Methods. 76(1): 18-24 (2009).
Badali, H., Gueidan, C., Najafzadeh, M.J., Bonifaz, A., Gerrits van den Ende, A.H.G., de Hoong, G.S. Biodiversity of the genus Cladophialophora. Studies in Mycology. 61: 175-191 (2008).
Cheewangkoon, R., Crous, P.W., Hyde, K.D., Groenewald, J.Z., and To-anan, C. Species of Mycosphaerella and Related Anamorphs on Eucalyptus Leaves from Thailand. Persoonia. 21: 77-91 (2008).
Crous, P.W., Wood, A.R., Okada, G., and Groenewald, J.Z. Foliicolous Microfungi Occurring on Encephalartos. Personnia. 21: 135-146 (2008).
Dandie, C.E., Miller, M.N., Burton, D.L., Zebarth, B.J., Trevors, J.T., Goyer, C. Nitric Oxide Reductase-Targeted Real-Time PCR Quantification Of Denitrifier Populations In Soil. Applied Environmental Microbiology. 73(13): 4250-4258 (2007).
Fernandez-Delgado, M., Contreras, M., Garcia-Amado, M.A., Gueneau, P., Suarez, P. Occurrences Of Proteus mirabilis Associated With Two Species Of Venezuelan Oyster. Revista Do Instituto de Medicina Tropical de Sao Paulo. 49(6): 355-359 (2007).
Lekberg, Y., Koide, R.T., Rohr, J.R., Aldrich-Wolfe, L., Morton, J.B. Role Of Niche Restrictions and Dispersal In The Composition Of Arbuscular Mycorrhizal Fungal Communities. Journal of Ecology. 95(1): 95-105 (2007).
Luna, R.A., Fasciano, L.R., Jones, S.C., Boyanton, B.L., Ton, T.T., Versalovic, J. DNA Pyrosequencing-Based Bacterial Pathogen Identification In A Pediatric Hospital Setting. Journal of Clinical Microbiology. 45(9): 2985-2992 (2007).
Weber, C. F., King, G.M. Physiological, Ecological, and Phylogenetic Characterization Of Stappia, A Marine CO-Oxidizing Bacterial Genus. Applied and Environmental Microbiology. 73(4): 1266-1276 (2007).
Mannisto, M.K, Haggblom, M.M. Characterization Of Psychrotolerant Heterotrophic Bacteria From Finnish Lapland. System and Applied Microbiology. 29(3): 229-243 (2006).
Fajardo-Cavazos, P., Link. L., Melosh, H.J., Nicholson, W.L. Bacillus subtilis Spores On Artificial Meteorites Survive Hypervelocity Atmospheric Entry: Implications For Lithopanspermia. Astrobiology. 5(6): 726-736 (2005).
Koide, R.T. Nucleic Acid Isolation From Ecological Samples – Fungal Associations, Mycorrhizae. Methods in Enzymology. 395: 58-72 (2005).
Cangelosi, G.A., Freeman, R.J., Lewis, K.N., Livingston-Rosanoff, D., Shah, K.S., Milan, S.J., Goldberg, S.V. Evaluation Of A High-Throughput Repetitive-Sequence-Based PCR System For DNA Fingerprinting Of Mycobacterium tuberculosis and Mycobacterium avium Complex Strains. Journal of Clinical Microbiology. 42(6): 2685-2693 (2004).
Castro, V.A., Thrasher, A.N., Healy, M., Ott, C.M., Pierson, D.L. Microbial Characterization During The Early Habitation Of The International Space Station. Microbial Ecology. 47(2): 119-126 (2004).
Gira, A.K., Reisenauer, A.H., Hammock, L., Nadiminti, U., Macy, J.T., Reeves, A., Burnett, C., Yakrus, M.A., Toney, S., Jensen, B.J., Blumberg, H.M., Caughman, S.W., Nolte, F.S. Furunculosis Due To Mycobacterium mageritense Associated With Footbaths At A Nail Salon. Journal of Clinical Microbiology. 42(4): 1813-1817 (2004).
Gonzalez, B.E., Martinez-Aguilar, G., Mason, E.O.Jr., Kaplan, S.L. Azithromycin Compared With beta-Lactam Antibiotic Treatment Failures In Pneumococcal Infections Of Children. The Pediatric Infectious Disease Journal. 23(5): 399-405 (2004).
Gonzalez, B.E., Hulten, K.G., Kaplan, S.L., Mason, E.O.Jr., The U.S. Pediatric Multicenter Pneumococcal Surveillance Study Group. Clonality Of Streptococcus pneumoniae Serotype 1 Isolates From Pediatric Patients In The United States. Journal of Clinical Microbiology. 42(6): 2810-2812 (2004).
Healy, M., Reece, K., Walton, D., Huong, J., Shah, K., and Konotoyiannis, D.P. Identification To The Species Level and Differentiation Between Strains Of Aspergillus Clinical Isolates By Automated Repetitive-Sequence-Based PCR. Journal of Clinical Microbiology. 24(9): 4016-4024 (2004).
Ishii, S., Loynachan, T.E. Rapid and Reliable DNA Extraction Techniques From Trypan-Blue-Stained Mycorrhizal Roots: Comparison Of Two Methods. Mycorrhiza. 14(4): 271-275 (2004).
Johnston, L.M., Jaykus, L.A. Antimicrobial Resistance Of Enterococcus Species Isolated From Produce. Applied and Environmental Microbiology. 70(5): 3133-3137 (2004).
Pena, J.A., Li, S.Y., Wilson, P.H., Thibodeau, S.A., Szary, A.J., Versalovic, J. Genotypic and Phenotypic Studies Of Murine Intestinal Lactobacilli: Species Differences In Mice With and Without Colitis. Applied and Environmental Microbiology. 70(1): 558-568 (2004).
Smith, D.S., Maxwell, P.W.,De Boer, S.H. Method For The Detection Of Synthetic cry3A In Transgenic Potatoes.Journal of Agricultural and Food Chemistry. 52(4): 809-815 (2004).
Zhang, L., Srinivasan, U., Marrs, C.F., Ghosh, D., Gilsdorf, J.R., Foxman, B. Library On A Slide For Bacterial Comparative Genomics. BMC Microbiology. 4(12) (2004).
Zhang, W., Jayarao, B.M.,Knabel, S.J. Multi-Virulence-Locus Sequence Typing Of Listeria monocytogenes. Applied and Environmental Microbiology. 70(2): 913-920 (2004).
Zhao, T., Doyle, M.P., Zhao, P. Control Of Listeria monocytogenes In A Biofilm By Competitive-Exclusion Microorganisms. Applied and Environmental Microbiology. 70(7): 3996-4003 (2004).
Cramer, R., Lawrence, C. Cloning Of A Gene Encoding An Alt a 1 Isoallergen Differentially Expressed By The Necrotrophic Fungus Alternaria brassicicola During Arabidopsis Infection. Applied and Environmental Microbiology. 69(4): 2361-2364 (2003).
Halda-Alija, L., Subgani, R.K., and Guettler, T. Identification Of Indole-3-Acetic Acid Producing Freshwater Wetland Rhizosphere Bacteria Associated With Juncus effuses L.. Canadian Journal of Microbiology. 12(49): 781-787 (2003).
Hong, Y., Berrang, M., Liu, T., Hofacre, C., Sanchez, S., Wang, L., Maurer, J. Rapid Detection Of Campylobacter coli, C. jejuni, and Salmonella enterica On Poultry Carcasses By Using PCR-Enzyme-Linked Immunosorbent Assay. Applied and Environmental Microbiology. 69(6): 3492-3499 (2003).
King, G.M. Molecular and Culture-Based Analyses Of Aerobic Carbon Monoxide Oxidizer Diversity. Applied and Environmental Microbiology. 69(12): 7257-7265 (2003).
King, G.M. Uptake Of Carbon Monoxide and Hydrogen At Environmentally Relevant Concentrations By Mycobacteria. Applied and Environmental Microbiology. 69(12): 7266-7272 (2003).
Mowbray, E., Buck, G., Humbaugh, K., Marshall, G. Maternal Colonization and Neonatal Sepsis Caused By Edwardsiella tarda. Pediatrics. 111(3): 296-298 (2003).
Koide, R.T., Dickie, I.A. Kit-Based: Low-Toxicity Method For Extracting and Purifying Fungal DNA From Ectomycorrhizal Roots. Biotechniques. 32(1): 52-56 (2002).
Tamayo, R., Ryan, S., McCoy, A., Gunn, J. Identification and Genetic Characterization Of PmrA-Regulated Genes and Genes Involved In Polymyxin B Resistance In Salmonella enterica Serovar Typhimurium. Infection and Immunity. 70(12): 6770-6778 (2002).

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Labeda, D.P., and Kroppenstedt, R.M. Proposal for the new genus Allokutzneria gen. nov. within the suborder Pseudonocardineae and transfer of Kibdelosporangium albatum Tomita et al. 1993 as Allokutzneria albata comb. nov.. International Journal of Systematic and Evolutionary Microbiology. 58: 1472-1475 (2008).
Labeda, D.P., Donahue, J.M., Sells, S.F., and Kroppenstedt, R.M. Lentzea kentuckyensis sp. nov., of equine origin. International Journal of Systematic and Evolutionary Microbiolgy. 57: 1780-1783 (2007).

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Edward D. Ziga, Todd Druley, and Carey-Ann D. Burnham Herbaspirillum Species Bacteremia in a Pediatric Oncology Patient. J. Clin. Microbiol., Nov 2010; 48: 4320 - 4321.
Marrazzo, J.M., Fiedler, T.L., Srinivasan, S., Thomas, K.K., Liu, C., Ko, D., Xie, H., Saracino, M., and Fredricks, D.N. Extravaginal Reservoirs of Vaginal Bacteria as Risk Factors for Incident Bacterial Vaginosis. J Infect Dis. 205(10): 1580-1588 (2012).

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Shawn E. Yost, Erin N. Smith, Richard B. Schwab, Lei Bao, HyunChul Jung, Xiaoyun Wang, Emile Voest, John P. Pierce, Karen Messer, Barbara A. Parker, Olivier Harismendy, and Kelly A. Frazer. Identification of high-confidence somatic mutations in whole genome sequence of formalin-fixed breast cancer specimens. Nucleic Acids Res. 1–12 (2012).

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Caliante, S., Prisco, M., Sciarrillo, R., De Falco, M., Capaldo, A., Gay, G., Andreuccetti, P., Laforgia, V., and Varano, L.Pituitary adenylate cyclase-activating polypeptide, vasoactive intestinal polypeptide and their receptors: distribution and involvement in the secretion of Podarcis sicula adrenal gland . Journal of Endocrinology. 196 291-303 (2008).
Lopez-Matas, M.A., Nuñez, P., Soto, A., Allona, I., Casado, R., Collada, C., Guevara, M.A., Aragoncillo, C., Gomez, L. Protein Cryoprotective Activity Of a Cytosolic Small Heat Shock Protein That Accumulates Constitutively In Chestnut Stems and Is Up-Regulated By Low and High Temperatures. Plant Physiology. 134(4): 1708-1717 (2004).
Scott, H.N., Laible, P.D., Hanson, D.K. Sequences Of Versatile Broad-Host-Range Vectors Of The RK2 Family. Plasmid. 50(1): 74-79 (2003).
Lukomski, S., Nakashima, K., Abdi, I., Cipriano, V.J., Shelvin, B.J., Graviss, E.A., Musser, J.M. Identification and Characterization Of A Second Extracellular Collagen-Like Protein Made By Group A Streptococcus: Control Of Production At The Level Of Translation. Infection and Immunity. 69(3): 1729-1738 (2001).
Allan, G.J., Shand, J.H., Beattie, J., Flint, D.J. Identification Of Novel Sites In The Bovine Growth Hormone Receptor Involved In Binding Hormone and Conferring Species Specificity. European Journal of Biochemistry. 261(2): 555-561 (1999).

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Wells, C.A., Salvage-Jones, J.A., Li, X., Hitchens, K., Butcher, S., Murray, R.Z., Beckhouse, A.G., Lo, Y., Manzanero, S., Cobbold, C., Schroder, K., Ma, B., Orr, S., Stewart, L., Lebus, D., Sobieszczuk, P., Hume, D.A., Stow, J., Blanchara, H., and Ashman, R.B. The Macrophage-Inducible C-Type Lectin, Micle is and Essential Component of the Innate Immune Response to Candida albicans. The Journal of Immunology. 180: 7404-7413 (2008).
Morin, P.A., Hedrick, N.M., Robertson, K.M., Leduc, C.A. Comparative Mitochondrial and Nuclear Quantitative PCR of Historical Marine Tissue, Bone, Baleen, and Tooth Samples . Molecular Ecology Notes. (7) 3: 404-411 (2007).
Ulrich, P.N., Colton, C.M., Hoover, C.A., Gaffney, P.M., Marsh, A.G. Haplosporidium Nelsoni rDNA Detection in Oysters from the Gulf of Mexico and the Caribbean Sea. Journal of Shellfisheries Research. (2007).

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Billaud, J.N., Peterson, D., Barr, M., Chen, A., Sallberg, M., Garduno, F., Goldstein, P., McDowell, W., Hughes, J., Jones, J., and Milich, D. Combinatorial Approach to Hepadnavirus-Like Particle Vaccine Design . Journal of Virology. 13656-13666 (2005).
Krinks, J. Microbial Assesment the Lindesn Bioremediation System Treating Acid Mine Drainage in the Huff Run Watershed .

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Casper, R.M., Jarman, S.N., Deagle, B.E., Gales, N.J., Hindell, M.A. Detecting Prey From DNA In Predator Scats: A Comparison With Morphological Analysis, Using Arctocephalus Seals Fed a Known Diet. Journal of Experimental Marine BIology and Ecology. 347(1-2): 144 (2007).
Casper, R.M., Jarman, S.N., Gales, N.J., Hindell, M.A. Combining DNA and Morphological Analyses Of Faecal Samples Improves Insight Into Trophic Interactions: A Case Study Using A Generalist Predator. Marine Biology. 152(4): 815-825 (2007).
Estonba, A., Solís, A., Iriondo, M., Sanz-Martín, M.J., Pérez-Suárez, G., Markov, G., Palacios, F. The Genetic Distinctiveness Of The Three Iberian Hare Species: Lepus europaeus, L. granatensis, and L. castroviejoi. Mammalian Biology. 71(1): 52-59 (2006).
Sery, O., Drtilkova, I., Theiner, P., Pitelova, R., Staif, R., Znojil, V., Lochman, J., Didden, W. Polymorphism Of DRD2 gene and ADHD. Neuro Endocrinology Lett. 27(1-2): 236-240 (2006).
Wong, E.M., Russock, H.I. Methods For Isolating Genomic DNA From The Mossambique Tilapia (Oreochromis mossambicus) For Randomly Amplified Polymorphic DNA Analysis. Journal of Ichthyology. 45(1): 183-184 (2005).
Zeman, K., Pospisil, L., Èanderle, J., Strobolva, H., Leypold, J., Gregor, Z.,Medkova, Z., Servy, O. Direct and Indirect Evidence Of Chlamydia Pneumoniae In Patients With Significant Stenosis Of A. Carotis Of Atherosclerotic Origin. SCRIPTA MEDICA (BRNO). 77(3): 173–180 (2004).

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Gozalbo-Lopez, B., Andrade, P., Terrados, G., de Andres, B., Serrano, N., Cortegano, I., Palacios, B., Bernad, A., Blanco, L., Marcos, M.A.R., and Gaspar, M.L. A Role for DNA Polymerase µ in the Emerging DJ_H Rearrangements of the Postgastrulation Mouse Embryo. Molecular and Cellular Biology. 29(5): 1266-1275 (2009).
Wang., X., Moni, P.T., Saint, C.P., and Jin, B. Biocehmical Kinetics of Fermentative Hydrogen Production by Clostridium butyricum W5. International Journal of Hydrogen Energy. 34(2): 791-798 (2009).
Chauhan, A., and Williams, H.N. Biostimulation of Estuarine Microbiota on Substrate Coated Agar Slides: A Novel Approach to Study Diversity of Autochthonous Bdellovibrio- and Like Organisms. Microbial Ecology. 55: 640-650 (2008).
Wang, X., Hoefel, D., Saint, C.P., Monis, P.T., Jin, B. The Isolation And Microbial Community Analysis Of Hydrogen Producing Bacteria From Activated Sludge. Journal of Applied Microbiology. 103(5): 1415-1423 (2007).
Corral, J., Aznar, J., Gonzalez-Conejero, R., Villa, P., Miñano, A., Vayá, A., Carrell, R.W., Huntington, J.A., Vicente, V. Homozygous Deficiency Of Heparin Cofactor II. Circulation. 110(10): 1303-1307 (2004).
Inagaki, F., Suzuki, M., Takai, K., Oida, H., Sakamoto, T., Aoki, K., Nealson, K.H., Horikoshi, K.. Microbial Communities Associated With Geological Horizons In Coastal Subseafloor Sediments From The Sea of Okhotsk. Applied and Environmental Microbiology. 69(12): 7224-7235 (2003).
Miron, M., Lasko, P., Sonenberg, N. Signaling From Akt To FRAP/TOR Targets Both 4E-BP and S6K In Drosophila melanogaster. Molecular and Cellular Biology. 23(24): 9117-9126 (2003).
Payne, K.J., Huang, G., Sahakian, E., Zhu, J.Y., Barteneva, N.S., Barsky, L.W., Payne, M.A., Crooks, G.M. Ikaros Isoform X Is Selectively Expressed In Myeloid Differentiation. Journal of Immunology. 170(6): 3091-3098 (2003).
Seguritan, V., Feng, I.W., Rohwer, F., Swift, M., Segall, A.M. Genome Sequences Of Two Closely Related Vibrio parahaemolyticus Phages, VP16T and VP16C. Journal of Bacteriology. 185(21): 6434-6447 (2003).
González-Conejero, R., Corral, J., Roldán, V., Martínez, C., Marín, F., Rivera, J., Iniesta, J.A., Lozano, M.L., Marco, P., Vicente, V. A Common Polymorphism In The Annexin V Kozak Sequence (-1C>T) Increases Translation Efficiency and Plasma Levels Of Annexin V, and Decreases The Risk Of Myocardial Infarction In Young Patients. Blood. 100(6): 2081-2086 (2002).
Song, X.M., Perez-Casal, J., Fontaine, M.C., Potter, A.A. Bovine Immunoglobulin A (IgA)-Binding Activities Of The Surface-Expressed Mig Protein Of Streptococcus dysgalactiae. Microbiology. 148(pt 7): 2055-2064 (2002).
Toro, J.R., Shevchenko, Y.O., Compton, J.G., Bale, S.J. Exclusion Of PTEN, CTNNB1, and PTCH As Candidate Genes For Birt-Hogg-Dube Syndrome. Journal of Medical Genetics. 39(2):e10 (2002).
Pavelock, K., Braas, K., Ouafik, L., Osol, G., May, V. Differential Expression and Regulation Of The Vascular Endothelial Growth Factor Receptors Neuropilin-1 and Neuropilin-2 In Rat Uterus. Endocrinology. 142(2): 613-622 (2001).
Takai, K., Komatsu, T., Inagaki, F., Horikoshi, K. Distribution Of Archaea In A Black Smoker Chimney Structure. Applied and Environmental Microbiology. 67(8): 3618-3629 (2001).

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Chapman, T.W., Marando, L., Oorebeek, M., and Kleindorfer, S. Genetic Structure in Ixodid Ticks from Kangaroo Island and the South Australia Mainland. Australian Journal of Entomology. 48: 40-46 (2009).
Gozalbo-Lopez, B., Andrade, P., Terrados, G., de Andres, B., Serrano, N., Cortegano, I., Palacios, B., Bernad, A., Blanco, L., Marcos, M.A.R., and Gaspar, M.L. A Role for DNA Polymerase µ in the Emerging DJ_H Rearrangements of the Postgastrulation Mouse Embryo. Molecular and Cellular Biology. 29(5): 1266-1275 (2009).
Harrington, M.G., Biffin, E., and Gadek, P.A. Comparative Study of the Evolution of Nuclear Ribosomal Spacers Incorporating Secondary Structure Analyzes within Dodonaeoideae, Hippocastanoideae and Xanthoceroidaea (Sapindaceae). Molecular Phylogenetics and Evolution. 50(2): 364-375 (2009).
Saar, I., Poldmaa, K., and Koljalg, U. The Phylogeny and Taxonomy of Genera Cystoderma and Cystodermella (Agaricales) Based on Nuclear ITS and LSU Sequences . Mycological Pregress. 8(1): 59-73 (2009).
Vukovi, J., Ruitenberg, M.J., Roet, K., Fransse, E., Arulpragasam, A., Sasaki, T., Verhaagen, J., Harvey A.R., Busfield, S.J., and Plant, G.W. The Glycoprotein Fibulin-3 Regulates Morphology and Motility of Olfactory Ensheathing Cells In Vitro. Glia. 57(4): 424-443 (2009).
King, G.M., Weber, C.F., Nanba, K., Sato, Y., and Ohta, H. Atmospherioc CO and Hydrogen Uptake and CO Oxidizer Phylogeny for Miyake-jima, Japan Volcanic Deposits. Microbes and Environments. 23(4): 299-305 (2008).
Morimoto, S., Ogawa, N., Hasebe, A., and Fujii, T. Isolation of Effective 3-Chlorobenzoate-Degraders in Soil Using Community Analyses by PCR-DGGE. Microbes and Environments. 23(4): 285-292 (2008).
Lekberg, Y., Koide, R.T., Rohr, J.R., Aldrich-Wolfe, L., Morton, J.B. Role Of Niche Restrictions and Dispersal In The Composition Of Arbuscular Mycorrhizal Fungal Communities. Journal of Ecology. 95(1): 95-105 (2007).W
Weber, C.F., King, G.M. Physiological, Ecological, and Phylogenetic Characterization Of Stappia, A Marine CO-Oxidizing Bacterial Genus. Applied and Environmental Microbiology. 73(4): 1266-1276 (2007).
Arcate, J.M., Karp, MA., Nelson, E.B. Diversity of Peronosporomycete (Oomycete) Communities Associated with the Rhizosphere of Different Plant Species . Microbial Ecology. 51: 36-50 (2006).
Charles, A.K., Hisheh, S., Liu, D., Rao, R.M., Waddell, B.J., Dickinson, J.E., Rao, A.J., Dharmarajan, A.M. The Expression Of Apoptosis Related Genes In The First Trimester Human Placenta Using A Short Term In Vitro Model. Apoptosis. 10(1): 135-140 (2005).
Casas, V., Kline, D.I., Wegley, L., Yu, Y., Breitbart, M., Rohwer, F. Widespread Association Of A Rickettsiales-Like Bacterium With Reef-Building Corals. Environmental Microbiology. 6(11): 1137-1148 (2004).
Burns, D.G., Camakaris, H.M., Janssen, P.H., Dyall-Smith, M.L. Combined Use Of Cultivation-Dependent and Cultivation-Independent Methods Indicates That Members Of Most Haloarchaeal Groups In An Australian Crystallizer Pond Are Cultivable. Applied and Environmental Microbiology. 70(9): 5258-5265 (2004).
Conn, V.M., Franco, C.M. Analysis Of The Endophytic Actinobacterial Population In The Roots Of Wheat (Triticum aestivum L.) By Terminal Restriction Fragment Length Polymorphism and Sequencing Of 16S rRNA Clones. Applied and Environmental Microbiology. 70(3): 1787-1794 (2004).
Dwyer, T., Stankovich, J.M., Blizzard, L., FitzGerald, L.M., Dickinson, J.L., Reilly, A., Williamson, J., Ashbolt, R., Berwick, M., Sale, M.M. Does The Addition Of Information On Genotype Improve Prediction Of The Risk Of Melanoma and Nonmelanoma Skin Cancer Beyond That Obtained From Skin Phenotype? American Journal of Epidemiology. 159(9): 826-833 (2004).
García-Velasco, J.A., Zúñiga, A., Pacheco, A., Gómez, R., Simón, C., Remohí, J., Pellicer, A. Coasting Acts Through Downregulation Of VEGF Gene Expression and Protein Secretion. Human Reproduction. 19(7): 1530-1538 (2004).
Gómez, R., Lima, I., Simón, C., Pellicer, A. Administration Of Low-Dose LH Induces Ovulation and Prevents Vascular Hyperpermeability and Vascular Endothelial Growth Factor Expression In Superovulated Rats. Reproduction. 127(4): 483-489 (2004).
Hu, D.G., Webb, G., Hussey, N. Aneuploidy Detection In Single Cells Using DNA Array-Based Comparative Genomic Hybridization. Molecular Human Reproduction. 10(4): 283-289 (2004).
Kaplan, C.W., Kitts, C.L. Bacterial Succession In A Petroleum Land Treatment Unit. Applied and Environmental Microbiology. 70(3): 1777-1786 (2004).
Kassenga, G., Pardue, J.H., Moe, W.M., Bowman, K.S. Hydrogen Thresholds As Indicators Of Dehalorespiration In Constructed Treatment Wetlands. Environmental Science Technology. 38(4): 1024-1030 (2004).
Krüger, R., Rakowski, S.A., Filutowicz, M. Isomerization and Apparent DNA Bending By pi, The Replication Protein Of Plasmid R6K. Biochemical and Biophysical Research Communications. 313(4): 834-840 (2004).
Lihová, J., Aguilar, J.F., Marhold, K., Feliner, G.N. Origin Of The Disjunct Tetraploid Cardamine amporitana (Brassicaceae) Assessed With Nuclear and Chloroplast DNA Sequence Data. American Journal of Botany. 91: 1231-1242 (2004).
Park, K., Luo, J.M., Hisheh, S., Harvey, A.R., Cui, Q. Cellular Mechanisms Associated With Spontaneous and Ciliary Neurotrophic Factor-cAMP-Induced Survival and Axonal Regeneration Of Adult Retinal Ganglion Cells. The Journal of Neuroscience. 24(48): 10806-10815 (2004).
Sakamoto, M., Huang, Y., Ohnishi, M., Umeda, M., Ishikawa, I., Benno, Y. Changes In Oral Microbial Profiles After Periodontal Treatment As Determined By Molecular Analysis Of 16S rRNA Genes. Journal of Medical Microbiology. 53(Pt 6): 563-571 (2004).
Vora, G.J., Meador, C.E., Stenger, D.A., Andreadis, J.D. Nucleic Acid Amplification Strategies For DNA Microarray-Based Pathogen Detection. Applied and Environmental Microbiology. 70(5): 3047-3054 (2004).
Warner, J., Epstein, M., Sweet, A., Singh, D., Burgess, J., Stranks, S., Hill, P., Perry-Keene, D., Learoyd, D., Robinson, B., Birdsey, P., Mackenzie, E., Teh, B.T., Prins, J.B., Cardinal, J. Genetic Testing In Familial Isolated Hyperparathyroidism: Unexpected Results and Their Implications. Journal of Medical Genetics. 41(3): 155-160 (2004).
Weizmann, Y., Patolsky, F., Popov, I., Willner, I. Telomerase-Generated Templates For The Growing Of Metal Nanowires. Nano Letters. 4(5): 787-792 (2004).
Zhu, Q.H., Ramm, K., Shivakkumar, R., Dennis, E.S., Upadhyaya, N.M. The ANTHER INDEHISCENCE1 Gene Encoding A Single MYB Domain Protein Is Involved In Anther Development In Rice. Plant Physiology. 135(3): 1514-25 (2004).
Branford, S., Rudzki, Z., Walsh, S., Parkinson, I., Grigg, A., Szer, J., Taylor, K., Herrmann, R., Seymour, J.F., Arthur, C., Joske, D., Lynch, K., Hughes, T. Detection of BCR-ABL Mutations In Patients With CML Treated With Imatinib Is Virtually Always Accompanied By Clinical Resistance, and Mutations In The ATP Phosphate-Binding Loop (P-loop) Are Associated With A Poor Prognosis. Blood. 102(1): 276-283 (2003).
Buchan, A., Newell, S.Y., Butler, M., Biers, E.J., Hollibaugh, J.T., Moran, M.A. Dynamics Of Bacterial and Fungal Communities On Decaying Salt Marsh Grass. Applied and Environmental Microbiology. 69(11): 6676-6687 (2003).
Byun, R., Nadkarni, M.A., Chhour, K.L., Martin, F.E., Jacques, N.A., Hunter, N. Quantitative Analysis Of Diverse Lactobacillus Species Present In Advanced Dental Caries. Journal of Clinical Microbiology. 42(7): 3128-3136 (2003).
González, A.J., Rodicio, M.R., Mendoza, M.C. Identification Of An Emergent and Atypical Pseudomonas viridiflava Lineage Causing Bacteriosis In Plants Of Agronomic Importance In A Spanish Region. Applied and Environmental Microbiology. 69(5): 2936-2941 (2003).
Gonzalez-Franco, A.C., Deobald, L.A., Spivak, A., Crawford, D.L. Actinobacterial Chitinase-Like Enzymes: Profiles Of Rhizosphere Versus Non-Rhizosphere Isolates. Canadian Journal of Microbiology. 49(11): 683-698 (2003).
King, G.M. Molecular and Culture-Based Analyses Of Aerobic Carbon Monoxide Oxidizer Diversity. Applied and Environmental Microbiology. 69(12): 7257-7265 (2003).
King, G.M. Uptake Of Carbon Monoxide and Hydrogen At Environmentally Relevant Concentrations By Mycobacteria. Applied and Environmental Microbiology. 69(12): 7266-7272 (2003).
La, T., Phillips, N.D., Hampson, D.J. Development Of A Duplex PCR Assay For Detection Of Brachyspira hyodysenteriae and Brachyspira pilosicoli In Pig Feces. Journal of Clinical Microbiology. 41(7): 3372-3375 (2003).
Mikucki, J.A., Liu, Y., Delwiche, M., Colwell, F.S., Boone, D.R. Isolation Of A Methanogen From Deep Marine Sediments That Contain Methane Hydrates, and Description Of Methanoculleus submarinus sp. Applied and Environmental Microbiology. 69(6): 3311-3316 (2003).
Mummey, D.L., Stahl, P.D. Spatial and Temporal Variability Of Bacterial 16S rDNA-Based T-RFLP Patterns Derived From Soil Of Two Wyoming Grassland Ecosystems. FEMS Microbiology Ecology. 46(1): 113-120 (2003).
Nilsson, W.B., Paranjype, R.N., DePaola, A., Strom, M.S. Sequence Polymorphism Of The 16S rRNA Gene Of Vibrio vulnificus Is A Possible Indicator Of Strain Virulence. Journal of Clinical Microbiology. 41(1): 442-446 (2003).
Pryce, T.M., Palladino, S., Kay, I.D., Coombs, G.W. Rapid Identification Of Fungi By Sequencing The ITS1 and ITS2 Regions Using An Automated Capillary Electrophoresis System. Medical Mycology. 41(5): 369-381 (2003).
Sait, L., Galic, M., Strugnell, R.A., Janssen, P.H. Secretory Antibodies Do Not Affect The Composition Of The Bacterial Microbiota In The Terminal Ileum Of 10-Week Old Mice. Applied and Environmental Microbiology. 69(4): 2100-2109 (2003).
Seguritan, V., Feng, I.W., Rohwer, F., Swift, M., Segall, A.M. Genome Sequences Of Two Closely Related Vibrio parahaemolyticus Phages, VP16T and VP16C. Journal of Bacteriology. 185(21): 6434-6447 (2003).
Vellani, T.S., Myers, R.S. Bacteriophage SPP1 Chu Is An Alkaline Exonuclease In The SynExo Family Of Viral Two-Component Recombinases. Journal of Bacteriology. 185(8): 2465-2474 (2003).
Buchan, A., Newell, S.Y., Moreta, J.I., Moran, M.A. Analysis Of Internal Transcribed Spacer (ITS) Regions Of rRNA Genes In Fungal Communities In A Southeastern U.S. Salt Marsh. Microbial Ecology. 43(3): 329-340 (2002).
Ingram, W.J., Wicking, C.A., Grimmond, S.M., Forrest, A.R., Wainwright, B.J. Novel Genes Regulated By Sonic Hedgehog In Pluripotent Mesenchymal Cells. Oncogene. 21(53): 8196-8205 (2002).
Lower, K.M., Turner, G., Kerr, B.A., Mathews, K.D., Shaw, M.A., Gedeon, A.K., Schelley, S., Hoyme, H.E., White, S.M., Delatycki, M.B., Lampe, A.K., Clayton-Smith, J., Stewart, H., van Ravenswaay, C.M., de Vries, B.B., Cox, B., Grompe, M., Ross, S., Thomas, P., Mulley, J.C., Gécz, J. Mutations In PHF6 Are Associated With Borjeson-Forssman-Lehmann Syndrome. Nature Genetics. 32(12): 661-665 (2002).
Nilsson, W.B., Strom, M.S. Detection and Identification Of Bacterial Pathogens Of Fish In Kidney Tissue Using Terminal Restriction Fragment Length Polymorphism (T-RFLP) Analysis Of 16S rRNA Genes. Diseases of Aquatic Organisms. 48(3): 175-185 (2002).
Saitoh, S., Noda, S., Aiba, Y., Takagi, A., Sakamoto, M., Benno, Y., Koga, Y. Bacteroides ovatus As The Predominant Commensal Intestinal Microbe Causing A Systemic Antibody Response In Inflammatory Bowel Disease. Clinical and Diagnostic Laboratory Immunology. 9(1): 54-59 (2002).
Sakamoto, M., Suzuki, M., Umeda, M., Ishikawa, I., Benno, Y. Reclassification Of Bacteroides forsythus (Tanner et al. 1986) As Tannerella forsythensis corrig., gen. nov., comb. nov. International Journal of Systematic and Evolutionary Microbiology. 52(Pt 3): 841-849 (2002).
Seeber, R.M., Smith, J.T., Waddell, B.J. Plasma Leptin-Binding Activity and Hypothalamic Leptin Receptor Expression During Pregnancy and Lactation In The Rat. Biology of Reproduction. 66(6): 1762-1767 (2002).
Srimanote, P., Paton, A.W., Paton, J.C. Characterization Of A Novel Type IV Pilus Locus Encoded On The Large Plasmid Of Locus Of Enterocyte Effacement-Negative Shiga-Toxigenic Escherichia coli Strains That Are Virulent For Humans. Infection and Immunity. 70(6): 3094-3100 (2002).
Strømme, P., Mangelsdorf, M.E., Shaw, M.A., Lower, K.M., Lewis, S.M., Bruyere, H., Lütcherath, V., Gedeon, A.K., Wallace, R.H., Scheffer, I.E., Turner, G., Partington, M., Frints, S.G., Fryns, J.P., Sutherland, G.R., Mulley, J.C., Gécz, J. Mutations In The Human Ortholog Of Aristaless Cause X-Linked Mental Retardation and Epilepsy. Nature Genetics. 30(4): 441-445 (2002).
Tiquia, S.M., Lloyd, J., Herms, D.A., Hoitink, H.A.J., Michel Jr, F.C. Effects Of Mulching and Fertilization On Soil Nutrients, Microbial Activity and Rhizosphere Bacterial Community Structure Determined By Analysis Of TRFLPs Of PCR-Amplified 16S rRNA Genes. Applied Soil Ecology. 21(1): 31-48 (2002).
Arzumanov, A., Walsh, A.P., Rajwanshi, V.K., Kumar, R., Wengel, J., Gait, M.J. Inhibition Of HIV-1 Tat-Dependent Trans Activation By Steric Block Chimeric 2’-O-Methyl/LNA Oligoribonucleotides. Biochemistry. 40(48): 14645-14654 (2001).
Buchan, A., Neidle, E.L., Moran, M.A. Diversity Of The Ring-Cleaving Dioxygenase Gene pcaH In A Salt Marsh Bacterial Community. Applied and Environmental Microbiology. 67(12): 5801-5809 (2001).
Kaplan, C.W., Astaire, J.C., Sanders, M.E., Reddy, B.S., Kitts, C.L. 16S Ribosomal DNA Terminal Restriction Fragment Pattern Analysis Of Bacterial Communities In Feces Of Rats Fed Lactobacillus acidophilus NCFM. Applied and Environmental Microbiology. 67(4): 1935-1939 (2001).
Mizutanim, J., Chiba, T., Tanaka, M., Higuchi, K., Mori, M. Unique Mutations In Mitochondrial DNA Of Senescence-Accelerated Mouse (SAM) Strains. Journal of Heredity. 92(4): 352-355 (2001).
Pavelock, K., Braas, K., Ouafik, L., Osol, G., May, V. Differential Expression and Regulation Of The Vascular Endothelial Growth Factor Receptors Neuropilin-1 and Neuropilin-2 In Rat Uterus. Endocrinology. 142(2): 613-622 (2001).
Yeadon, P.J., Rasmussen, J.P., Catcheside, D.E. Recombination Events In Neurospora crassa May Cross A Translocation Breakpoint By A Template-Switching Mechanism. Genetics. 159(10): 571-579 (2001).
Bhakta, S., Bartes, A., Bowman, K.G., Kao, W.M., Polsky, I., Lee, J.K., Cook, B.N., Bruehl, R.E., Rosen, S.D., Bertozzi, C.R., Hemmerich, S. Sulfation Of N-Acetylglucosamine By Chondroitin 6-Sulfotransferase 2 (GST-5). The Journal of Biological Chemistry. 275(51): 40226-40234 (2000).
Chiu, N.H., Tang, K., Yip, P., Braun, A., Koster, H., Cantor, C.R. Mass Spectrometry Of Single-Stranded Restriction Fragments Captured By An Undigested Complementary Sequence. Nucleic Acids Research. 28(8):e31-00 (2000).
George, J., Raju, R. Alphavirus RNA Genome Repair and Evolution: Molecular Characterization Of Infectious Sindbis Virus Isolates Lacking a Known Conserved Motif At The 3 End Of The Genome. Journal of Virology. 74(20): 9776-9785 (2000).

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Wolfe, B.E., Mummey, D.L., Rillig, M.C., Klironomos, J.N. Small-Scale Spatial Heterogeneity Of Arbuscular Mycorrhizal Fungal Abundance And Community Composition In A Wetland Plant Community. Mycorrhiza. 17(3): 175-183 (2007).
Hayashi, H., Takahashi, R., Nishi, T., Sakamoto, M., and Benno, Y. Molecular Analysis of Jejunal, Ileal, Caecal and Retro-sigmoidal Human Colonic Microbiota Using 16S rRNA Gene Libraries and Terminal Restriction Fragment Length Polymorphism. Journal of Medical Microbiology. 54: 1093-1101 (2005).
Wegley, L., Yu, Y., Breitbart, M., Casa, V., Kline, C.I., Rohwer, F. Coral-associated Archaea. Marine Ecology Progrss Series. 273: 89-96 (2004).

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Vassilopoulos, A., Gaitanaki, C., Papazafiri, P., Beis, I. Atrial Natriuretic Peptide mRNA Regulation by p38-MAPK in the Perfused Amphibian Heart . Cellular Physiology and Biochemisty. 16: 183-192 (2005).
Walker, T.L., Becker, D.K., Collet, C. Characterisation of the Dunaliella tertiolecta RbcS Genes and Their Promoter Activity in Chlamydomonas reinhardtii. . Plant Cell Reports. 23: 727-735 (2005).
Stevens, T.A., Iacovoni, J.S., Edelman, D.B., Meech, R. Identification Of Novel Binding Elements and Gene Targets For The Homeodomain Protein BARX2. Journal of Biological Chemistry. 279(15): 14520-14530 (2004).

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Laroche-Pierre, S., Jodoin, J., and LeBlanc, A.C. Helix 2 is Necessary and Sufficient for Prion Protein’s Anti-Bax Function. Journal of Neurochemistry. 108(4): 1019-1031 (2009).
Lin, D.T.S., Jodin, J., Baril, M., Goodyer, C.G., LeBlanc, A.C. Cytosolic Prion Protein is the Predominant Anti-Bax Prion Protein Form in the Anti-Bax Function. Biochimica et Biophysica Acta (BBA). 1783(10): 2001-2012 (2008).

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Wakelin, S.A., Colloff, M.J., Kookana, R.S. Effect of Waterwaste Treatment Plant Effluent on Microbial Function and Community Structure in the Sediment of a Freshwater Stream with Variable Seasonal Flow . Applied Environmental Microbiology. (74)9: 2659-2668 (2008).

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Madrid, V., Chistoserdov, A., Chapman, M., Price, B. Detection of Corros Ion-Inducing Prokaryotes Using the Dissmilatory Sulfate Reductase Gene . World Intellectual Property Organization. (2008).
García-Díaz, A., López-Andújar, P., Rodríguez Díaz, J., Montava, R., Torres Barceló, C., Ribes, J.M., Buesa, J. Nasal Immunization Of Mice With A Rotavirus DNA Vaccine That Induces Protective Intestinal IgA Antibodies. Vaccine. 23(4): 489-98 (2007).

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Andreote, F., Carneiro, R., Salles, J., Marcon, J., Labate, C., Azevedo, J., and Araujo, W. Culture-Independent Assessment of Rhizobiales-Related Alphaproteobacteria and the Diversity of Methylobacterium in the Rhizosphere and Rhizoplane of Transgenic Eucalyptus. Microbial Ecology. 57: 82-93 (2009).
Baniulyte, D., Favila, E., and Kelly, J.Shifts in Microbial Community Composition Following Surface Application of Dredged River Sediment. Microbial Ecology. 57: 160-169 (2009).
Barkovskii, A., Fukui, H., Leisen, J., Kim, S., Marsh, T., and Khijniak, A. Rearrangement of Bacterial Community Structure During Peat Diagenesis. Soil Biology and Biochemistry. 41: 135-143 (2009).
Blank, J.G., Green, S.J., Blake, D., Valley, J.W., Kita, N.T., Treiman, A., and Dodson, P.F. An alkaline spring within the Del Puerto Ophiolite (California, USA): a Mars analog site. Planetary and Space Science. 57: 533-540 (2009).
Bomberg, M., and Timonen, S. Effect of Tree Species and Mycorrhizal Colonization on the Archaeal Population of Boreal Forest Rhizospheres. Applied and Environmental Microbiology. 75(2): 308-315 (2009).
Bonkosky, M., Hernandez-Delgado, E.A., Sandoz, B., Robledo, I.E., Norat-Ramirez, J., and Mattei, H.Detection of Spatial Fluctuations of Non-point Source Fecal Pollution in Coral Reef Surrounding Waters in Southwestern Puerto Rico Using PCR-based Sssays . Marine Pollution Bulletin. 58: 45-54 (2009).
Carletti, P., Vendramin, E., Pizzeghello, D., Concheri, G., Zanella, A., Nardi, S., and Squartini, A.Soil Humic Compounds and Microbial Communities in Six Spruce Forests as Function of Parent Material, Slope Aspect and Stand Age.Plant Soil. 315: 47-65 (2009).
Contanza, J., Fletcher, K., Loffler, F., and Pennell, K.Fate of TCE in Heated Fort Lewis Soil. Environmental and Science Technology. 43: 909-914 (2009).
Giannantonio, D., Kurth, J., Kurtis, K., and Sobecky, P. Molecular Characterization of Microbial Communities Fouling Painted and Unpainted Concrete Structures. International Biodeterioration & Biodegradation. 63: 30-40 (2009).
Kaestli, M., Mayo, M., Harrington, G., Ward, L., Watt, F., Hill, J., Cheng, A., and Currie, B. Lanscape Changes Influence the Occurrence of the Melioidosis Bacterium Burkholderia pseudomallei in Soil in Northern Australia. PLoS. 3(1): e364 (2009).
Reith, F., Wakelin, S., Gregg, A., and Mumm, A. A Microbial Pathway for the Formation of Gold-anomalous Calcrete. Chemical Geology. 258: 315-325 (2009).
Robinson, C., Szaro, T., Izzo, A., Anderson, I., Parkin, P., and Bruns, T. Spatial Distribution of Fungal Communities in a Costal Grassland Soil. . 41:414-416 (2009).
Sunagawa, S., DeSantis, T.Z., Piceno, Y.M., Brodie, E.L., DeSalvo, M.K., Voolstra, C.R., Weil E., Andersen, G.L., and Medina, M. Bacterial Diversity and While Plague Disease-associated Community Changes in the Caribbean Coral Montastraea faveolata. The ISME Journal> 1 - 10 (2009).
Trifonova, R., Babini, V., Postma, J., Ketelaars, J.J.M.H., and van Elsas. J.D.Colonization of Torrefied Grass Fibers bt plant-beneficial Microorganisms. Applied Soil Ecology. 41: 98-106 (2009).
Tsutsumi, M., Kojima, H., Uemura, S., Ono, K., Sumida, A., Hara, T., and Fukui, M.Structure and Activity of Soil-inhibiting Methanotrophic Communities in Northern Forest of Japan. Soil Biology and Biochemistry. 41: 403-408 (2009).
Van Steampvoort, D.R., Millar, K., and Lawrence, J.R. Accumulation of Short-chain Fatty Acids in an Aquitard Linked to Anaerobic Biodegradation of Petroleum Hydrocarbons. Applied Geochemistry. 24: 77-85 (2009).
Bates, S.T., and Garcia-Pichel, F. A Culture-independent Study of Free-living Fungi in Biological Soil Crusts of the Colorado Plateau: Their Diversity and Relative Contribution to Microbial Biomass. Environmental Microbiology. 11(1): 56-67 (2008).
Green, S.J., Blackford, C., Bucki, P., Jahnke, L.L., and Prufert-Bebout, L.A salinity and sulfate manipulation of hypersaline microbial mats reveals stasis in the cyanobacterial community structure. The ISME Journal. 2: 457-470 (2008).
Harvey, P.R., Warren, R.A., Wakelin, S. The Pythium-Fusarium Root Disease Complex - An Emerging Constraint To Irrigated Maize In Southern New South Wales. CSIRO Publishing. 48: 367-374 (2008).
Jaing, C., Gardner, S., McLoughlin, K., Mulakken, N., Alergria-Hatman, M., Banda, P., Williams, P., Gu, P., Wagner, M., Manohar, C., and Slezak, T. A Functional Gene Array for Detection of Bacterial Virulence Elements. PLoS. 3(5): e2163 (2008).
Julien, M-C., Dion, P., Lafreniere, C., Antoun, H., Drouin, P. Sources of Clostridia in Raw Milk on Farms. Applied and Environmental Microbiology. 74(20) 6348-6357 (2008).
King, G.M., Weber, C.F., Nanba, K., Sato, Y., and Ohta, H. Atmospheric CO and Hydrogen Uptake and CO Oxidizer Phylogeny for Miyake-jima, Japan Volcanic Deposits. Microbes and Environments. 23(4): 299-305 (2008).
Lymer, D., Logue, J.B., Brussaard, C.P.D., Baudoux, A., Vrede, K., and Lindstrom, E.S.Temporal Variation in Freshwater Viral and Bacterial Community Composition. Freshwater Biology. 53: 1163-1175 (2008).
Wakelin, S.A., Colloff, M.J., Kookana, R.S. Effect Of Wastewater Treatment Plant Effluent On Microbial Function and Community Structure In The Sediment Of A Freshwater Stream With Variable Seasonal Flow. Applied and Environmental Microbiology. 74(9): 2659-2668 (2008).
Wakelin, S.A., Warren, R.A., Kong, L., Harvey, P.R. Management Factors Affecting Size and Structure Of Soil Fusarium Communities Under Irrigated Maize In Australia. Elsevier. 39(2): 201-209 (2008).
Ahn, Y., Haggblom, M.M., and Kerkhog, L.J. Comparison of Anaerobic Microbial Communities from Estuarine Sediments Amended with Halogenated Compounds to Enhance Dechloriation of 1,2,3,4-tetrachlorodibenzo-p-dioxin. FEMS Microbiology Ecology. 61: 362-372 (2007).
Blackwood, C.B., Buyer, J.S. Evaluating The Physical Capture Method Of Terminal Restriction Fragment Length Polymorphism For Comparison Of Soil Microbial Communities. Soil Biology & Biochemistry. 39(2): 590-599 (2007).
Brooks, J.P., Gerba, C.P., and Pepper, I.L.Diversity of Aerosolized Bacteria During Land Application of Biosoils. Journal of Applied Microbiology. 103: 1779-1790 (2007).
Buckley, D.H., Huangyutitham, V., Hus, F., Nelson, T.A. Stable Isotope Probing With 15N Achieved By Disentangling The Effect Of Genome G+C and Isotope Enriched On DNA Density. Applied and Environmental Microbiology. 73(10): 3189-3195 (2007).
Green, S.J., Michelm F.C., Hada, Y., and Minz, D. Contrasting patterns of seed and root colonization by bacteria from the genus Chryseobacterium and from the family Oxalobacteracaea. the ISME Journal. 1: 291-299 (2007).
Kaestli, M., Mayo, M., Harrington, G., Watt, F., Hill, J., Gal, D., Currie, B.J. Sensitive and Specific Molecular Detection Of Burkholderia pseudomallei, The Causative Agent Of Melioidosis, In The Soil Of Tropical Nothern Australia. Applied and Environmental Microbiology. 73(21): 6891-6897 (2007).
Kennedy, P.G., Bergemann, S.E., Hortal, S., Bruns, T.D. Determining The Outcome Of Field-Based Competition Between Two Rhizopogon Species Using Real-Time PCR. Molecular Ecology. 16(4): 881-890 (2007).
Kennedy, P.G., Hortal, S., Bergemann, S.E., Bruns, T.D. Competitive Interactions Among Three Ectomycorrhizal Fungi and Their Relation To Host Plant Performance. Journal of Ecology. 95(6): 1338-1345 (2007).
Manzano, M., Moran, A.C., Tesser, B., Gonzales, B. Role Of Eukaryotic Microbiota In Soil Survival and Catabolic Performance Of The 2,4-D Herbicide Degrading Bacteria Cupriavidus necator JMP134. Antonie Van Leeuwenhoek. 91(2): 115-126 (2007).
Nadarajah, N., Allen, D.G., Fulthorpe, R.R. Effects Of Transient Temperature Conditions On The Divergence Of Activated Sludge Bacterial Community Structure and Function. Elsevier. 41(12): 2563-2571 (2007).
Perreault, N.N., Andersen, D.T., Pollard, W.H., Greer, C.W., Whyte, L.G. Characterization Of The Prokaryotic Diversity In Cold Saline Perennial Springs Of The Canadian High Arctic. Applied and Environmental Microbiology. 73(5): 1532-1543 (2007).
Wang, X., Hoefel, D., Saint, C.P., Monis, P.T., Jin, B. The Isolation And Microbial Community Analysis Of Hydrogen Producing Bacteria From Activated Sludge. Journal of Applied Microbiology. 103(5): 1415-1423 (2007).
Whitehouse, C.A., Hottel, H.E. Comparison Of Five Commercial DNA Extraction Kits For The Recovery Of Francisella tularensis DNA From Spike Soil Samples. Molecular and Cellular Probes. 21(2): 92-96 (2007).
Arcate, J.M., Karp, MA., Nelson, E.B. Diversity of Peronosporomycete (Oomycete) Communities Associated with the Rhizosphere of Different Plant Species . Microbial Ecology. 51: 36-50 (2006).
Blackwood, C.B., Dell, C.J., Smucker, A.J.M., Paul, E.A. Eubacterial Communities In Different Soil Macroaggregate Environments and Cropping Systems. Soil Biology & Biochemistry. 38(4): 720-728 (2006).
Cao, Y., Cherr, G.N., Cordova-Kreylos, A.L., Fan, T.W.M., Green, P.G., Higashi, R.M., LaMontagne, M.G., Scow, K.M., Vines, C.A., Yuan, J., Holden, P.A. Relationships Between Sediment Microbial Communities and Pollutants In Two California Salt Marshes. Microbial Ecology. 52(4): 619-633 (2006).
Casas, V., Miyake, J., Balsley, H., Roark, J., Telles, S., Leeds, S., Zurita, I., Breitbart, M., Bartlett, D., Azam, F., Rohwer, F. Widespread Occurrence Of Phage-Encoded Exotoxin Genes In Terrestrial and Aquatic Environments In Southern California. Federation of European Microbiological Societies Microbial Letter. 261(1): 141-149 (2006).
Chauhan, A., Reddy, K.R., Ogram, A.V. Syntrophic-Archaeal Associations In A Nutrient-Impacted Freshwater Marsh. Journal of Applied Microbiology. 100(1): 73–84 (2006).
Cordova-Kreylos, A.L., Cao, Y., Green, P.G., Hwang, H., Kuivila, K.M., LaMontagne, M.G., Van De Werfhorst, L.C., Holden, P.A., Scow, K.M. Diversity, Composition, and Geographical Distribution Of Microbial Communities In California Salt Marsh Sediments. Applied and Environmental Microbiology. 72(5): 3357-3366 (2006).
De La Iglesia, R., Castro, D., Ginoccchio, R., Van Der Lelie, D., Gonzales, B. Factors Influencing The Composition Of Bacterial Communities Found At Abandoned Copper-Tailing Dumps. Journal of Applied Microbiology. 100(3): 537-544 (2006).
Gil, F., De la Iglesia, R., Mendoza, L., Gonzales, B., Wilkens, M. Soil Bacteria Are Differentially Affected By The Resin Of The Medicinal Plant Pseudognaphalium vira vira and Its Main Kauraneoic Acid. Microbial Ecology. 52(1): 10-18 (2006).
Moran, A.C., Muller, A., Manzano, M., Gonzales, B. Simazine Treatment History Determines a Significant Herbicide Degradation Potential In Soils That Is Not Improved By Bioaugmentation With Pseudomonas sp. ADP. Journal of Applied Microbiology. 101(1): 26-35 (2006).
Blackwood, C., Oaks, A., Buyer, S. Phylum- and Class Specific PCR Primers For General Microbial Community Analysis. Applied and Environmental Microbiology. 71(10): 6193-6198 (2005).
Kennedy, P.G., Bruns, T.D. Priority Effects Determine The Outcome Of Ectomycorrhizal Competition Between Two Rhizopogon Species Colonizing Pinus muricata Seedlings. New Phytologist. 166(2): 631-638 (2005).
Koide, R.T. Nucleic Acid Isolation From Ecological Samples – Fungal Associations, Mycorrhizae. Methods in Enzymology. 395: 58-72 (2005).
Lievens, B., Brouwer, M., Vanachter, A.C., Levesque, C.A., Cammue, B.P.A., Thomma, B.P. Quantitative Assessment Of Phytopathogenic Fungi In Various Substrates Using A DNA Macroarray. Environmental Microbiology. 7(11): 1462-2920 (2005).
Borrok, D., Fein, J.B., Kulpa, C.F. Cd and Proton Adsorption Onto Bacterial Consortia Grown From Industrial Wastes and Contaminated Geologic Settings. Environmental Science and Technology. 38(21): 5656-5664 (2004).
Casas, V., Kline, D., Wegley, L., Yu, Y., Breitbart, M., Rohwer, F. Widespread Association Of A Rickettsiales-Like Bacterium With Reef-Building Corals. Environmental Microbiology. 6(11): 1137-1148 (2004).
Chauhan, A., Ogram, A., Reddy, K.R. Syntrophic-Methanogenic Associations Along A Nutrient Gradient In The Florida Everglades. Applied and Environmental Microbiology. 70(6): 3475-3484 (2004).
Coupland, K., Johnson, D.B. Geochemistry and Microbiology Of An Impounded Subterranean Water Body At Mynydd Parys, Anglesey, Wales. Geobiology. 2: 77-86 (2004).
De Souza, F.A., Kowalchuk, G.A., Leeflang, P., Van Veen, J.A., Smit, E. PCR-Denaturing Gradient Gel Electrophoresis Profiling Of Inter-and Intraspecies 18S rRNA Gene Sequence Heterogeneity Is An Accurate and S ensitive Method To Assess Species Diversity Of Arbuscular Mycorrhizal Fungi Of The Genus Gigaspora. Applied and Environmental Microbiology. 70(3): 1413-1424 (2004).
Devare, M.H., Jones, C.M., Thies, J.E. Effect Of Cry3Bb Transgenic Corn and Tefluthrin On The Soil Microbial Community: Biomass, Activity, and Diversity. Journal of Environmental Quality. 33(3): 837-843 (2004).
Duhamel, M., Mo, K., Edwards, E.A. Characterization Of A Highly Enriched Dehalococcoides-Containing Culture That Grows On Vinyl Chloride and Trichloroethene. Applied and Environmental Microbiology. 70(9): 5538-5545 (2004).
Filion, M., Hamelin, R.C., Bernier, L., St-Arnaud, M. Molecular Profiling Of Rhizosphere Microbial Communities Associated With Healthy and Diseased Black Spruce (Picea mariana) Seedlings Grown In A Nursery. Applied and Environmental Microbiology. 70(6): 3541-3551 (2004).
Green, S.J., Michel, F.C., Hadar, Y., and Minz, D. Similarity of vacterial communites in sawdust- and stram-amended cow manure composts. FEMS Microbiology Letters. 233: 115-123 (2004).
Hackl, E., Zechmeister-Boltenstern, S., Bodrossy, L., Sessitsch, A. Comparison Of Diversities and Compositions Of Bacterial Populations Inhabiting Natural Forest Soils. Applied and Environmental Microbiology. 70(9): 5057-5065 (2004).
Hogan, J., Sherlock, O., Ryan, D., Whelan, C., Francesconi, S., Rivilla, R., Dowling, D.N. Fluorescence Resonance Energy Transfer (FRET) Based Molecular Detection Of A Genetically Modified PCB Degrader In Soil. FEMS Microbiology Letters. 236(2): 349-357 (2004).
Kang, S., Mills, A.L. Soil Bacterial Community Structure Changes Following Disturbance Of The Overlying Plant Community. Soil Science. 169(1): 55-65. (2004).
Kaplan, C.W., Kitts, C.L. Bacterial Succession In A Petroleum Land Treatment Unit. Applied and Environmental Microbiology. 70(3): 1777-1786 (2004).
Kassenga, G., Pardue, J.H., Moe, W.M., Bowman, K.S. Hydrogen Thresholds As Indicators Of Dehalorespiration In Constructed Treatment Wetlands. Environmental Science Technology. 38(4): 1024-1030 (2004).
Kellogg, C.A. Tropical Archaea: Diversity Associated With The Surface Microlayer Of Corals. Marine Ecology Progress Series. 273: 81-88 (2004).
De Souza, F.A., Kowalchuk, G.A., Leeflang, P., Van Veen, J.A., Smit, E. PCR-Denaturing Gradient Gel Electrophoresis Profiling Of Inter- and Intraspecies 18S rRNA Gene Sequence Heterogeneity Is An Accurate and Sensitive Method To Assess Species Diversity Of Arbuscular Mycorrhizal Fungi Of The Genus Gigaspora. Applied Environmental Microbiology. 70(3): 1413-1424 (2004).
Leveau, J., Gerards, S., De Boer, W., Van Veen, J. Molecular Identification Of The Catabolic Vinyl Chloride Reductase From Dehalococcoides sp. Strain VS and Its Environmental Distribution. Applied and Environmental Microbiology. 70(8): 4880-4888 (2004).
Leveau, J.H.J., Gerards, S., de Boer, W., and van Veen, J.A. Phylogeny-function analysis of (meta)genomic libraries : screening for expression of ribosomal RNA genes by large-insert library fluorescent in situ hybridization (LIL-FISH). Environmental Microbiology. 6(9): 990-998 (2004).
Mummey, D.L., Stahl, P.D. Analysis Of Soil Whole- and Inner-Microaggregate Bacterial Communities. Microbial Ecology. 48(1): 41-50 (2004).
North, N.N., Dollhopf, S.L., Petrie, L., Istok, J.D., Balkwill, D.L., Kostka, J.E. Change In Bacterial Community Structure During In Situ Biostimulation Of Subsurface Sediment Cocontaminated With Uranium and Nitrate. Applied and Environmental Microbiology. 70(8): 4911-4920 (2004).
Pearson, A., Huang, Z., Ingalls, A.E., Romanek, C.S., Wiegel, J., Freeman, K.H., Smittenberg, R.H., Zhang, C.L. Nonmarine Crenarchaeol In Nevada Hot Springs. Applied and Environmental Microbiology. 70(9): 5229-5237 (2004).
Salles, J., van Veen, J.A., van Elsas, J.D. Multivariate Analyses Of Burkholderia Species In Soil: Effect Of Crop and Land Use History. Applied and Environmental Microbiology. 70(7): 4012-4020 (2004).
Simpson, J.M., Santo Domingo, J.W., Reasoner, D.J. Assessment Of Equine Fecal Contamination: The Search For Alternative Bacterial Source-Tracking Targets. FEMS Microbiology Ecology. 47(1): 65-75 (2004).
Smith, A.H., Mackie, R.I. Effect Of Condensed Tannins On Bacterial Diversity and Metabolic Activity In The Rat Gastrointestinal Tract. Applied and Environmental Microbiology. 70(2): 1104-1115 (2004).
Stevenson, B.S., Eichorst, S.A., Wertz, J.T., Schmidt, T.M., Breznak, J.A. New Strategies For Cultivation and Detection Of Previously Uncultured Microbes. Applied and Environmental Microbiology. 70(8): 4748-4755 (2004).
Stres, B., Mahne, I., Avgustin, G., Tiedje, J.M. Nitrous Oxide Reductase (nosZ) Gene Fragments Differ Between Native and Cultivated Michigan Soils. Applied and Environmental Microbiology. 70(1): 301-309 (2004).
Wang, G., Gentry, T.J., Grass, G., Josephson, K., Rensing, C., Pepper, I.L. Real-Time PCR Quantification Of A Green Fluorescent Protein – Labeled, Genetically Engineered Pseudomonas putida Strain During 2-Chlorobenzonate Degradation In Soil. FEMS Microbiology Letters. 233(2): 307-314 (2004).
Ahn, Y., Rhee, S., Fennell, D., Kerkhof, L., Hentschel, U., Haggblom, M. Reductive Dehalogenation Of Brominated Phenolic Compounds By Microorganisms Associated With The Marine Sponge Aplysina aerophoba. Applied and Environmental Microbiology. 69(7): 4159-4166 (2003).
Atkins, S.D., Clark, I.M., Sosnowska, D., Hirsch, P.R., Kerry, B.R. Detection and Quantification Of Plectosphaerella cucumerina, A Potential Biological Control Agent Of Potato Cyst Nematodes, By Using Conventional PCR, Real-Time PCR, Selective Media, and Baiting. Applied and Environmental Microbiology. 69(8): 4788-4793 (2003).
Atkins, S.D., Hidalgo-Diaz, L., Clark, I.M., Morton, C.O., Montes de Oca, N., Gray, P.A., Kerry, B.R. Approaches For Monitoring The Release Of Pochonia chlamydosporia var. catenulata, A Biocontrol Agent Of Root-Knot Nematodes. Mycological Research. 107(pt 2): 206-212 (2003).
Bernot, M.J., Dodds, W.K., Gardner, W.S., McCarthy, M.J., Sobolev, D., Tank, J.L. Comparing Dentrification Estimates For A Texas Estuary By Using Acetylene Inhibition and Membrane Inlet Mass Spectrometry. Applied and Environmental Microbiology. 69(10): 5950-5956 (2003).
Blackwood, C., Marsh, T., Kim, S., Paul, E. Terminal Restriction Fragment Length Polymorphism Data Analysis For Quantitative Comparison Of Microbial Communities. Applied and Environmental Microbiology. 69(2): 926-932 (2003).
Blackwood, C.B., Paul, E.A. Eubacterial Community Structure and Population Size Within The Soil Light Fraction, Rhizosphere, and Heavy Fraction Of Several Agricultural Systems. Soil Biology & Biochemistry. 35(9): 1245-1255 (2003).
Buchan, A., Newell, S.Y., Butler, M., Biers, E.J., Hollibaugh J.T., Moran, M.A. Dynamics Of Bacterial and Fungal Communities On Decaying Salt Marsh Grass. Applied and Environmental Microbiology. 69(11): 6676-6687 (2003).
Christner, B.C, Kvitko, B.H., Reeve, J.N. Molecular Identification Of Bacteria and Eukarya Inhabiting An Antarctic Cryoconite Hole. Extremophiles. 7(3): 177-183 (2003).
De Boer, W., Verheggen, P., Klein Gunnewiek, P., Kowalchuk, G., Van Veen, J. Microbial Community Composition Affects Soil Fungistasis. Applied and Environmental Microbiology. 69(2): 835-844 (2003).
Dhillon, A., Teske, A., Dillon, J., Stahl, D., Sogin, M. Molecular Characterization Of Sulfate-Reducing Bacteria In The Guaymas Basin. Applied and Environmental Microbiology. 69(5): 2765-2772 (2003).
Duan, Y.P., Castro, H., Hewlett, T., White, J., Ogram, A. Detection and characterization of Pasteuria 16S rRna Gene Sequences From Nematodes and Soils. International Journal of Systematic and Evolutionary Microbiology. 53(Pt 1): 105-112 (2003).
Franklin, R.B., Mills, A.L. Multi-Scale Variation In Spatial Heterogeneity For Microbial Community Structure In An Eastern Virginia Agricultural Field. FEMS Microbiology Ecology. 44(3): 335-346 (2003).
Gomes, N.C.M., Fagbola, O., Costa, R., Rumjanek, N.G., Buchner, A., Mendona-Hagler, L., Smalla, K. Dynamics Of Fungal Communities In Bulk and Maize Rhizosphere Soil In The Tropics. Applied and Environmental Microbiology. 69(7): 3758-3766 (2003).
Inagaki, F, Suzuki, M., Takai, K., Oida, H., Sakamoto, T., Aoki, K., Nealson, K., Horikoshi, K. Microbial Communities Associated With Geological Horizons In Coastal Subseafloor Sediments From The Sea Of Okhotsk. Applied and Environmental Microbiology. 69(12): 7224-7235 (2003).
Kormas, K., Smith, D., Edgcomb, V., Teske, A. Molecular Analysis Of Deep Subsurface Microbial Communities In Nankai Trough sediments (ODP Leg 190, Site 1176). FEMS Microbiology Ecology. 45(2): 115-125 (2003).
Kowalchuk G.A., Van Os, G.J., van Aartrijk, J., van Veen, J.A. Microbial Community Responses To Disease Management Soil Treatments Used In Flower Bulb Cultivation. Biology & Fertility of Soils. 37(1): 55-63 (2003).
Lendvay, J.M., Loffler, F.E., Dollhopf, M., Aiello, M.R, Daniels, G., Fathepure, B.Z., Gebhard, M., Heine, R., Helton, R., Shi, J., Krajmalnik-Brown, R., Major, C.L., Barcelona, M.J. Jr., Petrovskis, E., Hickey, R., Tiedje, J.M., Adriaens, P. Bioreactive Barriers: A Comparison Of Bioaugmentation and Biostimulation For Chlorinated Solvent Remediation. Environmental Science Technology. 37(7): 1422-1431 (2003).
Lievens, B., Brouwer, M., Vanachter, A.C., Levesque, C.A., Cammue, B.P., Thomma, B.P. Design and Development Of A DNA Array For Rapid Detection and Identification Of Multiple Tomato Vascular Wilt Pathogens. FEMS Microbiology Letters. 223(1): 113-122 (2003).
Litaker, R.W., Vandersea, M.W., Kibler, S.R., Reece, K.S., Stokes, N.A., Steidinger, K.A., Millie, D.F., Bendis, B.J., Pigg, R.J. Identification Of Pfiesteria piscicida (Dinophyceae) and Pfiesteria-Like Organisms Using Internal Transcribed Spacer-Specific Assays. Journal Phycology. 39(4): 754-761 (2003).
Lyons, J.I., Newell, S.Y., Buchan, A., Moran, M.A. Diversity Of Ascomycete Laccase Gene Sequences In A Southeastern US Salt Marsh. Microbial Ecology. 45(3): 270-281 (2003).
Mackie, R.I., Aminov, R.I., Hu, W., Klieve, A.V., Ouwerkerk, D., Sundset, M.A., Kamagata, Y. Ecology Of Uncultivated Oscillospira Species In The Rumen Of Cattle, Sheep and Reindeer As Assessed By Microscopy and Molecular Approaches. Applied and Environmental Microbiology. 69(11): 6808-6815 (2003).
Mummey, D.L., Stahl, P.D. Spatial and Temporal Variability Of Bacterial 16S rDNA-Based T-RFLP Patterns Derived From Soil Of Two Wyoming Grassland Ecosystems. FEMS Microbiology Ecology. 46(1): 113-120 (2003).
Mummey, D.L., Stahl, P.D. Candidate Division BD: Phylogeny, Distribution and Abundance In Soil Ecosystems. Systematic and Applied Microbiology. 26(2): 228-235 (2003).
Nejstgaard, J.C., Frischer, M.E., Raule, C.L., Gruebel, R., Kohlberg, K.E., Verity, P.G. Molecular Detection Of Algal Prey In Copepod Guts and Fecal Pellets. Limnology and Oceanography: Methods. 1: 29-38 (2003).
Nikolcheva, L., Cockshutt, A., Barlocher, F. Determining Diversity Of Freshwater Fungi On Decaying Leaves: Comparison Of Traditional and Molecular Approaches. Applied and Environmental Microbiology. 69(5): 2548-2554 (2003).
Nour, S., Lawrence, J., Zhu, H., Swerhone, G., Welsh, M., Welacky, T., Topp, E. Bacteria Associated With Cysts Of The Soybean Cyst Nematode (Heterodera glycines). Applied and Environmental Microbiology. 69(1): 607-615 (2003).
Olivera, N.L., Commendatore, M.G., Delgado, O., Esteves, J.L. Microbial Characterization and Hydrocarbon Biodegradation Potential Of Natural Bilge Waste Microflora. Journal of Industrial Microbiology and Biotechnology. 30(9): 542-548 (2003).
Petrie, L., North, N.N., Dollhopf, S.L., Balkwill, D.L., Kostka, J.E. Enumeration and Characterization Of Iron(III)-Reducing Microbial Communities From Acidic Subsurface Sediments Contaminated With Uranium(VI). Applied and Environmental Microbiology. 69(12): 7467-7479 (2003).
Radnedge, L., Agron, P., Hill, K., Jackson, P., Ticknor, L., Kleim, P., Andersen, G. Genome Differences That Distinguish Bacillus anthracis From Bacillus cereus and Bacillus thuringiensis. Applied and Environmental Microbiology. 69(5): 2755-2764 (2003).
Rodriguez, R.A., Toranzos, G. Stability Of Bacterial Populations In Tropical Soil Upon Exposure To Lindane. International Microbiology. 6(4): 253-258 (2003).
Schlesinger, W.H., Pippen, J.S., Wallenstein, M.D., Hofmockel, K.S., Klepeis, D.M., Mahall, B.E. Community Composition and Photosynthesis By Photoautotrophs Under Quartz Pebbles, Southern Mojave Desert. Ecology. 84(12): 3222-3231 (2003).
Schonfeld, J., Heuer, H., van Elsas, J.D., Smalla, K. Specific and Sensitive Detection Of Ralstonia solanacearum In Soil On The Basis Of PCR Amplification Of fliC Fragments. Applied and Environmental Microbiology. 69(12): 7248-7256 (2003).
Singh, B.K., Walker, A., Morgan, J.A.W., Wright, D.J. Effects Of Soil pH On The Biodegradation Of Chlorpyrifos and Isolation Of A Chlorpyrifos-Degrading Bacterium. Applied and Environmental Microbiology. 69(9): 5198-5206 (2003).
Singh, B.K., Walker, A., Morgan, J.A.W., Wright, D.J. Role Of Soil pH In The Development Of Enhanced Biodegradation Of Fenamiphos. Applied and Environmental Microbiology. 69(12): 7035-7043 (2003).
Smith, A., Imlay, J., Mackie, R. Increasing The Oxidative Stress Response Allows Escherichia coli To Overcome Inhibitory Effects Of Condensed Tannins. Applied and Environmental Microbiology. 69(6): 3406-3411 (2003).
Stepanauskas, R., Moran, M.A., Bergamaschi, B.A., Hollibaugh, J.T. Covariance Of Bacterioplankton Composition and Environmental Variables In A Temperate delta System.Aquatic Microbial Ecology. 31(1): 85-98 (2003).
Truu, J., Karme, L., Talpsep, E., Vedler, E., Heinaru, A. Phytoremediation Of Solid Oil Shale Waste From The Chemical Industry. Acta Biotechnology. 23(2-3): 301-307 (2003).
Aminov, R.I., Chee-Sanford, J.C., Garrigues, N., Teferedegne, B., Krapac, I.J., White, B.A., Mackie, R.I. Development, Validation, and Application Of PCR Primers For Detection Of Tetracycline Efflux Genes Of Gram-Negative Bacteria. Applied and Environmental Microbiology. 68(4): 1786-1793 (2002).
Castro, H., Reddy, K.R., Ogram, A. Composition and Function Of Sulfate-Reducing Prokaryotes In Eutrophic and Pristine Areas Of The Florida Everglades. Applied and Environmental Microbiology. 68(12): 6129-6137 (2002).
Cho, J., Tiedje, J.M. Quantitative Detection Of Microbial Genes By Using DNA Microarrays. Applied and Environmental Microbiology. 68(3): 1425-1430 (2002).
Galand, P.E., Saarnio, S., Fritze, H., Yrjala, K. Depth Related Diversity Of Methanogen Archaea In Finnish Oligotrophic Fen. FEMS Microbiology Ecology. 42(3): 441-449 (2002).
Ibekwe, A.M., Watt, P., Grieve, C., Sharma, V., Lyons, S. Multiplex Fluorogenic Real-Time PCR For Detection and Quantification Of Escherichia coli O157:H7 In Dairy Wastewater Wetlands. Applied and Environmental Microbiology. 68(10): 4853-4862 (2002).
Jordan, M., Sanchez, M.A., Padilla, L., Cespedes, R., Osses, M., Gonzales, B. Kraft Mill Residues Effects On Monterey Pine Growth and Soil Microbial Activity. Journal of Environmental Quality. 31(3): 1004-1009 (2002).
Kostka, J., Dalton, D., Skelton, H., Dollhopf, S., Stucki, J. Growth Of Iron(III)-Reducing Bacteria On Clay Minerals As The Sole Electron Acceptor and Comparison Of Growth Yields On A Variety Of Oxidized Iron Forms. Applied and Environmental Microbiology. 68(12): 6256-6262 (2002).
Kowalchuk, G.A., De Souza, F.A., Van Veen, J.A. Community Analysis Of Arbuscular Mycorrhizal Fungi Associated With Ammophila arenaria In Dutch Coastal Sand Dunes. Molecular Ecology. 11(3): 571-81 (2002).
Kowalchuk, G.A., Buma, D.S., De Boer, W., Klinkhamer, P.G.L., Van Veen, J.A. Effects Of Above-Ground Plant Species Composition and Diversity On The Diversity Of Soil-Borne Microorganisms. Antonie van Leeuwenhoek. 81(1-4): 509-520 (2002).
Mauchline, T.H., Kerry, B.R., Hirsch, P.R. Quantification In Soil and The Rhizosphere Of The Nematophagous Fungus Verticillium chlamydosporium By Competitive PCR and Comparison With Selective Plating. Applied and Environmental Microbiology. 68(4): 1846-1853 (2002).
Pitulle, C., Strehse, D., Brown, J.W., Breitschwerdt, E.B. Investigation Of The Phylogenetic Relationships Within The Genus Bartonella Based On Comparative Sequence Analysis Of The rnpB Gene, 16S rDNA and 23S rDNA. International Journal of Systematic and Evolutionary Microbiology. 52(pt 6): 2075-2080 (2002).
Prieme, A., Braker, G., Tiedje, J. Diversity Of Nitrite Reductase (nirK and nirS) Gene Fragments In Forested Upland and Wetland Soils. Applied and Environmental Microbiology. 68(4): 1893-1900 (2002).
Reed, D.W., Fujita, Y., Delwiche, M.E., Blackwelder, D.B., Sheridan, P.P., Uchida, T., Colwell, F.S. Microbial Communities From Methane Hydrate-Bearing Deep Marine Sediments In A Forearc Basin. Applied and Environmental Microbiology. 68(8): 3579-3770 (2002).
Rodrigues, J.L.M., Aiello, M.R., Urbance, J.W., Tsoi, T.V., Tiedje, J.M. Use Of Both 16S rRNA and Engineered Functional Genes With Real-Time PCR To Quantify An Engineered, PCB-Degrading Rhodococcus In Soil. Journal of Microbiological Methods. 51(2): 181-189 (2002).
Salles, J., De Souza, F., Van Elsas, J. Molecular Method To Assess The Diversity Of Burkholderia Species In Environmental Samples. Applied and Environmental Microbiology. 68(4): 1595-1603 (2002).
Tiquia, S.M., Lloyd, J., Herms, D.A., Hoitink, H.A.J., Michel, F.C. Effects Of Mulching and Fertilization On Soil Nutrients, Microbial Activity and Rhizosphere Bacterial Community Structure Determined By Analysis Of TRFLPs Of PCR-Amplified 16S rRNA Genes. Applied Soil Ecology. 21(1): 31-48 (2002).
Aminov, R.I., Garrigues-Jeanjean, N., Mackie, R.I. Molecular Ecology Of Tetracycline Resistance: Development and Validation Of Primers For Detection Of Tetracycline Resistance Genes Encoding Ribosomal Protection Proteins. Applied and Environmental Microbiology. 67(1): 22-32 (2001).
Gruntzig, V., Nold, S., Zhou, J., Tiedje, J.M. Pseudomonas stutzeri Nitrite Reductase Gene Abundance In Environmental Samples Measured By Real-Time PCR. Applied and Environmental Microbiology. 67(2): 760-768 (2001).
Kaplan, C.W., Astaire, J.C., Sanders, M.L., Reddy, B.S., Kitts, C.L. 16S Ribosomal DNA Terminal Restriction Fragment Pattern Analysis Of Bacterial Communities In Feces Of Rats Fed Lactobacillus acidophilus NCFM. Applied and Environmental Microbiology. 67(4): 1935-1939 (2001).
Niemi, R.M., Heiskanen, I., Wallenius, K., Lindstrom, K. Extraction and Purification Of DNA In Rhizosphere Soil Samples For PCR-DGGE Analysis Of Bacterial Consortia. Journal of Microbiological Methods. 45(3): 155-165 (2001).
Rohwer, F., Breitbart, M., Jara, J., Azam, F., Knowlton, N. Diversity Of Bacteria Associated With The Caribbean Coral Montastraea franksi. Coral Reefs. 20: 85-91 (2001).
Stults, J., Snoeyenbos-West, O., Methe, B., Lovley, D., Chandler, D. Application Of The 5 Fluorogenic Exonuclease Assay (TaqMan) For Quantitative Ribosomal DNA and rRNA Analysis In Sediments. Applied and Environmental Microbiology. 67(6): 2781-2789 (2001).
Loffler, F.E., Sun, Q., Li, J., Tiedje, J.M. 16S rRNA Gene-Based Detection Of Tetrachloroethene-Dechlorinating Desulfuromonas and Dehalococcoides Species. Applied and Environmental Microbiology. 66(4): 1369-1374 (2000).
Takai, K., Horikoshim, K. Rapid Detection and Quantification Of Members Of The Archaeal Community By Quantitative PCR Using Fluorogenic Probes. Applied and Environmental Microbiology. 66(11): 5066-5072 (2000).
Tanner, M., Everett, C., Youvan, D. Molecular Phylogenetic Evidence For Noninvasive Zoonotic Transmission Of Staphylococcus intermedius From A Canine Pet To A Human. Journal of Clinical Microbiology. 38(4): 1628-1631 (2000).
Braid, M.D., Nicholas, L.M., Clement, B.G., Kitner, J.B., Kitts, C.L., Brolaski, M.N., Venugopal, R.J. Testing The UltraClean Soil DNA Purification Kit On A Diverse Range Of Soils By PCR Amplification Of 16S rDNA. Poster Presentation at the American Society of Microbiology Meeting Chicago, Illinois. (1999).

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Ishii, S., Loynachan, T.E. Rapid and Reliable DNA Extraction Techniques From Trypan-Blue-Stained Mycorrhizal Roots: Comparison Of Two Methods. Mycorrhiza. 14(4): 271-275 (2004).
Lu, J., Idris, U., Harmon, B., Hofacre, C., Maurer, J.J., Lee, M.D. Diversity and Succession Of The Intestinal Bacterial Community Of The Maturing Broiler Chicken. Applied and Environmental Microbiology. 69(11): 6816-6824 (2003).
Beller, H.R., Kane, S.R., Legler, T.C., Alvarez, P.J. A Real-Time Polymerase Chain Reaction Method For Monitoring Anaerobic, Hydrocarbon-Degrading Bacteria Based On A Catabolic Gene. Environmental Science and Technology. 36(18): 3977-3894 (2002).

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Crump, B.C., Koch, E.W Attached Bacterial Populations Shared by Four Species of Aquatic Angiosperms. Applied and Enviromental Microbiologu. 74(19): 5948-5957 (2008).
Li, J., Santo Somingo, J.W., Lamendella, R., Edge, T., Hill, S. Phylogenetic Diversity and Molecular Detection of Bacteria in Gull Feces. Applied and Environmental Microbiology. 74(13): 3969-3976 (2008).
Stauffer, S.H., Birkenheuer, A.J., Levy, M.G., Marr, H., Gookin, J.L. Evaluation of Four DNA Extraction Methods for the Detection of Tritrichomonas foetus in Feline Stool Specimens by Polymerase Chain Reaction. Journal of Veterinary Diagnostic Investigation 20: 639-641 (2008).

Watanabe, J., Nishimukai, M., Taguchi, H., Senoura, T., Hamada, S., Matsui, H., Yamamoto, T., Wasaki, J., Haea, H., and Ito, S. Prebiotic Preoperties of Epilactose. Journal of Dairy Science. 91:1, 4518-4526 (2008).

Casper, R.M., Jarman, S.N., Deagle, B.E., Gales, N.J., Hindell, M.A. Detecting Prey From DNA In Predator Scats: A Comparison With Morphological Analysis, Using Arctocephalus Seals Fed a Known Diet. Journal of Experimental Marine BIology and Ecology. 347(1-2): 144 (2007).
Casper, R.M., Jarman, S.N., Gales, N.J., Hindell, M.A. Combining DNA and Morphological Analyses Of Faecal Samples Improves Insight Into Trophic Interactions: A Case Study Using A Generalist Predator. Marine Biology. 152(4): 815-825 (2007).
Hong, C., Decaro, N., Desario, D., Tanner, P., Pardo, M.C., Sanchez, S., Buonavoglia, C., Saliki, J.T. Occurrence Of Canine Parvovirus Type 2C In The United States. Journal of Veterinary Diagnostic Investigations. 19(5): 535-539 (2007).
Wertz, J.T., Breznak, J.A. Physiological Ecology Of Stenoxybacter acetivorans, An Obligate Microaerophile In Termite Guts. Applied and Environmental Microbiology. 73(21): 6829-6841 (2007).
Dumonceaux, T.J., Hill, J.E., Briggs, S.A., Amoakoa, K.K., Hemingsen, S.M., Van Kesse, A.G. Enumeration Of Specific Bacterial Populations In Complex Intestinal Communities Using Quantitative PCR Based On The Chaperonin-60 Target. Journal of Microbiological Methods. 64(1): 46-62 (2006).
Stevenson, B.S., Eichorst, S.A., Wertz, J.T., Schmidt, T.M., Breznak, J.A. New Strategies For Cultivation and Detection Of Previously Uncultured Microbes. Applied and Environmental Microbiology. 70(8): 4748-4755 (2004).
McGarvey, J.A., Miller, W.G., Sanchez, S., Stanker, L. Identification Of Bacterial Populations In Dairy Wastewaters By Use Of 16S rRNA Gene Sequences and Other Genetic Markers. Applied and Environmental Microbiology. 70(7): 4267-4275 (2004).
Ibekwe, A.M., Grieve C,M., Lyon, S.R. Characterization Of Microbial Communities and Composition In Constructed Dairy Wetland Wastewater Effluent. Applied and Environmental Microbiology. 69(9): 5060-5069 (2003).
Trochimchuk, T., Fotheringham, J., Topp, E., Schraft, H., Leung, K.T. A Comparison of DNA Extraction and Purification Methods To Detect Escherichia coli O157:H7 In Cattle Manure. Journal of Microbiological Methods. 54(2): 165-175 (2003).
Ibekwe, A.M., Watt, P.M., Grieve, C.M., Sharma, V.K., Lyons, S.R. Multiplex Fluorogenic Real-Time PCR For Detection and Quantification Of Escherichia coli O157:H7 In Dairy Wastewater Wetlands. Applied and Environmental Microbiology. 68(10): 4853-4862 (2002).
Clement, B.G., Kitts, C.L. Isolating PCR Quality DNA From Human Feces With A Soil DNA Kit. Biotechniques. 28(4): 640-642,644,646 (2000).

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Accinelli, C., Abbas, H.K., Zablotowicz, R.M., Wilkinson, J.R. Aspergillus flavus Aflatoxin Occurrence and Expression Of Aflatoxin Biosynthesis Genes In Soil. Canadian Journal of Microbiology. 54(5): 371-379 (2008).
Lee, P.K., Macbeth, T.W., Sorenson, K.S. Jr., Deeb, R.A., Alvarez-Cohen, L. Quantifying Genes and Transcripts To Assess The In Situ Physiology Of "Dehalococcoides" spp. In A Trichloroethene-Contaminated Groundwater Site. Applied and Environmental Microbiology. 74(9): 2728-2739 (2008).
McGrath, K.C., Thomas-Hall, S.R., Cheng, C.T., Leo, L., ALexa, A., Schmidt, S., and Schenk, P.M. Isolation and Analysis of mRNA from Environmental Microbial Communities. Journal of Microbiological Methods. 75: 712-176 (2008).
Pittman, G.W., Brumbley, S.M., Allsopp, P.G., O'Neill, S.L. Assessment Of Gut Bacteria For A Paratransgenic Approach To Control Dermolepida albohirtum Larvae. Applied and Environmental Microbiology. 74(13):4036-4043 (2008).
Xing, D., Ren, N., Rittmann, B.E. Genetic Diversity Of Hydrogen-Producing Bacteria In An Acidophilic Ethanol-H₂-Coproducing System, Analyzed Using The [Fe]-Hydrogenase Gene. Applied and Environmental Microbiology. 74(4): 1232-1239 (2008).
Yu, Y.J., Majumdar, P.N., Nechvatal, J.M., Ram, J.L., Basson, M.D., Heilbrun, L.K., Kato, I. Exfoliated Cells in Stool: A Source for Reverse Transcription-PCR-Based Analysis of Biomarkers of Gastrointestinal Cancer. Cancer Epidemiol Biomarkers Prev. 17(2): 455-458 (2008).

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Mueller-Spitz, S.R., Goetz, G.W., and McLellan S. Temporal and Spatial Varibility in Nearshore Bacterioplankton Communities of Lake Michigan. FEMS Microbiology Ecology. 67(3):511-522 (2009).
Nieto, M.P., and Carbone, S.S. Characterization of Juvenile Maritime Pine (Pinus pinaster Ait.) Ectomycorrhizal Fungal Community Using morphotyping, Direct Sequencing and Fruitbodies Sampling. Mycorrhiza. 19(2): 91-98 (2009).
Elshahed, M.S., Youssef, N.H., Spain, A.M., Sheik, C., Najar, F.Z., Sukharnikov, L.O., Roe, B.A., Davis, J.P., Schloss, P.D., Bailey, V.L., Krumholz, L.R. Novelty and Uniqueness Patterns Of Rare Members Of The Soil Biosphere. Applied and Environmental Microbiology. (2008).
Andreote, F.D., Mendes, R., Dini-Andreote, F., Rossetto, P.B., Labate, C.A., Pizzirani-Kleiner, A.A., Van Elsas, J.D., Azevedo, J.L., Araújo, W.L. Transgenic Tobacco Revealing Altered Bacterial Diversity In The Rhizosphere During Early Plant Development. Antonie Van Leeuwenhoek. 93(4): 415-424 (2008).
Floyd, A.L. Effects of Inundation Regime and Plant Community On Soil Bacterial Communities In An Eastern Shore, VA Salt Marsh. University of Virginia. (2007).
Hawkins, I. Detecting Leptospira In Water: Evaluation Of a Proposed Method. University of Hawaii. (2007).
Katz, D.E. The Hidden Benefits Of Real-Time PCR: Assessing and Addressing Qualitative Challenges. Profiles in DNA. (2007).
Kaestli, M., Mayo, M., Harrington, G., Watt, F., Hill, J., Gal, D., Currie, B.J. Sensitive and Specific Molecular Detection Of Burkholderia pseudomallei, The Causative Agent Of Melioidosis, In The Soil Of Tropical Nothern Australia. Applied and Environmental Microbiology. 73(21): 6891-6897 (2007).

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Van De Werfhorst*, L.C., Sercu, B., and Holden, P.A. Comparison of the Host Specificities of Two Bacteroidales Quantitative PCR Assays Used for Tracking Human Fecal Contamination. Applied and Environmental Microbiology. 77(17): 6258-6260 (2011).
Alcantara-Hernandez, R.J., Valenzuela-Encinas, C., Marsch, R., and Dendooven, L. Respiratory and Dissimilatory Nitrate-reducing Communities from and Extreme Saline Alkaline Soil of the Former Lake Texcoco (Mexico). Extremophiles. 13(1): 169-178 (2009).
Foster, J.S., Green, S.J., Ahrendt, S.R., Golubic, S., Reid, R.P., Jetherington, K.L., and Bebout, L. Molecular and Morphological Characterization of Cyanobacterial Diversity in the Stromatolites of Highborne Cay, Bahamas. ISME Journal. 1-15 (2009).
Giubilei, M.A., Leonardi, V., Federici, E., Covino, S., Sasek, V., Novotny, C, Federici, F., D’Annibale, A., and Petruccioli, M. Effect of Mobilizing Agents on Mycoremediation and Impact on the Indigenous Microbiota. Chemical Technology and Biotechnology. 84(6): 836-844 (2009).
Liebner, S., Rublack, K., Stuehrmann, T., and Wagner, D. Diversity of Aerobic Methantrophic Bacteria in a Permafrost Active Layer Soil of the Lena Delta, Siberia. Microbial Ecology. 57(1): 25-35 (2009).
Mueller-Spitz, S.R., Goetz, G.W., and McLellan S. Temporal and Spatial Varibility in Nearshore Bacterioplankton Communities of Lake Michigan. FEMS Microbiology Ecology. 67(3):511-522 (2009).
Pitet, M., Camprubi, A., Calvet, C., and Estaun, V. A Modified Staining Technique for Arbuscular Mycorrhiza Compatible with Molecular Probes. Mycorrhiza. 19(2): 125-131 (2009).
Rastogi, G., Sani, R.K., Peyton, B.M., Moberly, J.G., and Ginn, T.R. Molecualr Studies on the Microbial Diversity Associated with Mining-Impacted Coeur d’Alene River Sediments. Microbial Ecology. 58(1): 129-139 (2009).
Rastogi, G., Osman, S., Vaishampayan, P.A., Andersen, G.L., Stetler, L.D., and Sani, R.K.Microbial Diversity in Uranium Mining-Impacted Soils as Revealed by High-Density 16S Microarray and Clone Library. Microbial Ecology. (2009).
Sampedro, I., Giuvilei, M., Cajthaml, T., Federici, E., Frederici, F., Petruccioli, M., and D’annibale, A.Short-term impact of dry olive mill residue addition to soil on the resident microbiota. Bioresource Technology. 100: 6098-6106 (2009).
Sundset, M.A., Edwards, J.E., Cheng, Y.F., Senosiain, R.S., Fraile M.N., Northwood, K.S., Praesteng, K.E., Glad, R., Mathiesen, S.D., and Wright, A-D. G. Molecular Diversity of the Rumen Microbiome of Norwegian Reindeer of Natural Summer Pasture. Microbial Ecology. 57(2): 335-348 (2009).
Viau, E. and Peccia, J. Survey of Wastewater Indicators and Human Pathogen Genomes in Biosolids Produced by Class A and Class B Stabilization Treatments. Applied and Environmental Microbiology. 75(1): 167-174 (2009).
Rastogi, G., Stetler, L.D., Peyton, B.M., and Sani, R.K.Molecular Analysis of Prokaryotic Diversity in the Deep Subsurface of the former Homestake Fold Mine, South Dakota, USA. The Journal of Microbiology. 41(4) (2009).
Wagner, A.O., Malin, C., and Illmer, P. Application of Denaturing High-Performance Liquid Chromatography in Microbial Ecology: Fermentor Sludge, Compost, and Soil Community Profiling. Applied and Environmental Microbiology. 75(4): 956-964 (2009).
Hortal, S., Pera, J., Parlade, J. Tracking Mycorrhizas and Extraradical Mycelium Of The Edible Fungus Lactarius deliciosus Under Field Competition With Rhizopogon spp. Mycorrhiza. 18(2): 69-77 (2008).
Leonardi, V., Giubilei, M.A., Federici, E., Spaccapelo, R., Sasek, V., Novotny, C., Petrucciolo, M., D'Annibale, A. Mobilizing agents enhance fungal degradation of polycyclic aromatic hydrocarbons and affect diversity of indigenous bacteria in soil.. Biotechnology and Bioengineering. 101: 273-285 (2008).
Loy, A., Duller, S., Baranyi, C., MuBmann, M., Ott, J., Sharon, I., Beja, O., Le Paslier, D., Dahl, C., and Wagner, M. Reverse Dissimilatory Sulfate Reductase as Phylogenetic Marker for a Subgroup of Sulfur-oxidizing Prokaryotes. Environmental Microbiology. 11(2): 289-299 (2009).
Marcelino, J.A.P., Gouli, S., Giordano, R., Gouli, V.V., Parker, B.L., and Skinner, M. Fungi Associated with a Natural Epizootic in Fiorinia extrna Ferris (HemipteraL Diaspididae) Populations. Journal of Applied Entomology. 133(2): 82-89 (2008).
Savazzini, F., Longa, C.M.O., Pertot, I., and Gessler, C. Real-time PCR for Detection and Quantification of the Biocontrol Agent Trichoderma atroviride Strain SC1 in Soil. Journal of Microbiological Methods. 73(2): 185-194 (2008).
Wakelin, S.A., Macdonald, L.M., Rogers, S.L., Gregg, A.L., Bloger, T.P., Baldock, J.A. Habitat Selective Factors Influencing The Structural Composition and Functional Capacity Of Microbial Communities In Agricultural Soils. Elsevier. 40(3): 803-813 (2008).
Blackwood, C.B., Waldrop, M.P., Zak, D.R., Sinsabaugh, R.L. Molecular Analysis Of Fungal Communities and Laccase Genes In Decomposing Litter Reveals Differences Among Forest Types But No Impact Of Nitrogen Deposition. Environmental Microbiology. 9(5): 1306-1316 (2007).
Federici, E., Leonardi, V., Giubilei, M.A., Quaration, D., Spaccapelo, R., D'Annibale, A., Petruccioli, M. Addition Of Allochthonous Fungi To a Historically Contaminated Soil Effects Both Remediation Efficiency and Bacterial Diversity. Applied and Environmental Biotechnology. 77(1): 203-211 (2007).
Marchetti, E., Accinelli, C., Talame, V., Epifani, R. Persistence Of Cry Toxins and cry Gene From Genetically Modified Plants In Two Agricultural Soils. Agronomy for Sustainable Development. 27(3): 231-236 (2007).
Mummey, D.L., Rillig, M.C. Evaluation Of LSU rRNA-Gene PCR Primers For The Study Of Arbuscular Mycorrhizal Fungal Communities Via Terminal Restrictions Fragment Length Polymorphism Analysis. Journal of Microbiological Methods. 70(1): 200-204 (2007).
Poulain, A.J., Ní Chadhain, S.M., Ariya, P.A., Amyot, M., Garcia, E., Campbell, P.G., Zylstra, G.J., Barkay, T. Potential For Mercury Reduction By Microbes In The High Arctic. Applied and Environmenal Microbiology. 73(7): 2230-2238 (2007).
Ufnar, J.A., Ufnar, D.F., Wang, S.Y., Ellender, R.D. Development of A Swine-Specific Fecal Pollution Marker Based On Host Differences In Methanogen mcrA Genes. Applied and Environmental Microbiology. 73(16): 5209-5217 (2007).
Mummey, D.L., Rillig, M.C., Six, J. Endogeic Earthworms Differentially Influence Bacterial Communities Associated With Different Soil Aggregate Size Fractions. Soil Biology & Biochemistry. 35(7): 1608-1614 (2006).
Hortal, S., Pera, J., Galipienso, L., Parladé, J., Molecular Identification Of The Edible Ectomycorrhizal Fungus Lactarius deliciosus In The Symbiotic and Extraradical Mycelium Stages. Journal of Biotechnology. 126(2): 123-134 (2006).
Mummey, D.L., Rillig, M.C. The Invasive Plant Species Centaurea maculosa Alters Arbuscular Mycorrhizal Fungal Communities In The Field. Plant Soil. 288: 81-90 (2006).

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Venugopal, R.J., Brolaski, M.N. Novel High Throughput Method For Studying Microbial Communities and Genes In Soil. Bioscience Technology. 28(5): 48-49 (2003).

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Nunoura, T. and Takai, K. Comparison of Microbial Communities Associated with Phase-separation-induced Hydrothermal Fluids at the Yonaguni Knoll IV Hydrothermal Field, the Southern Okinawa Trough. FEMS Microbiology Ecology. 67(3): 351-370 (2009).
Nunoura, T., Inagaki, F., Delwiche, M.E., Colwell, F.S., and Takai, K. Subseafloor Microbial Communities in Methane Hydrate-bearing Sediment at Two Distinct Locations (ODP Leg204) in the Cascadia Margin. Microbes and Environment. 23(4): 317-328 (2008).
Fell, J.W., Scorzetti, G., Connell, L., and Craig, S. Biodiversity of Micro-eukaryotes in Antarctic Dry Valley Soils with <5% Soil Moisture. Soil Biology and Biochemistry. 38(10): 3107-3119 (2006).
Dunfield, K.E., King, G.M. Molecular Analysis Of Carbon Monoxide-Oxidizing Bacteria Associated With Recent Hawaiian Volcanic Deposits. Applied and Environmental Microbiology. 70(7): 4242-4248 (2004).
Rhee, S.K., Liu, X., Wu, L., Chong, S.C., Wan, X., Zhou, J. Detection Of Genes Involved In Biodegradation and Biotransformation In Microbial Communities By Using 50-Mer Oligonucleotide Microarrays. Applied and Environmental Microbiology. 70(7): 4303-4317 (2004).
Atkins, S.D, Clark, I.M., Sosnowska, D., Hirsch, P.R., Kerry, B.R. Detection and Quantification Of Plectosphaerella cucumerina, A Potential Biological Control Agent Of Potato Cyst Nematodes, By Using Conventional PCR, Real-Time PCR, Selective Media, and Baiting. Applied and Environmental Microbiology. 69(8): 4788-4793 (2003).
Blackwood, C.B., Marsh, T., Kim, S.H., Paul, E.A. Terminal Restriction Fragment Length Polymorphism Data Analysis For Quantitative Comparison Of Microbial Communities. Applied and Environmental Microbiology. 69(2): 926-932 (2003).
Buchan, A., Newell, S.Y., Butler, M., Biers, E.J., Hollibaugh, J.T., Moran, M.A. Dynamics Of Bacterial and Fungal Communities On Decaying Salt Marsh Grass. Applied and Environmental Microbiology. 69(11): 6676-6687 (2003).
Inagaki, F., Suzuki, M., Takai, K., Oida, H., Sakamoto, T., Aoki, K., Nealson, K.H., Horikoshi, K. Microbial Communities Associated With Geological Horizons In Coastal Subseafloor Sediments From The Sea Of Okhotsk. Applied and Environmental Microbiology. 69(12): 7224-7235 (2003).
Stach, J.E., Maldonado, L.A., Masson, D.G., Ward, A.C., Goodfellow, M., Bull, A.T. Statistical Approaches For Estimating Actinobacterial Diversity In Marine Sediments. Applied and Environmental Microbiology. 69(10): 6189-6200 (2003).
Suzuki, Y., Kelly, S.D., Kemner, K.M., Banfield, J.F. Microbial Populations Stimulated For Hexavalent Uranium Reduction In Uranium Mine Sediment. Applied and Environmental Microbiology. 69(3): 1337-1346 (2003).
Brofft, J.E., McArthur, J.V., Shimkets, L.J. Recovery Of Novel Bacterial Diversity From A Forested Wetland Impacted By Reject Coal. Environmental Microbiology. 4(11): 764-769 (2002).
Buchan, A., Newell, S.Y., Moreta, J.I., Moran, M.A. Analysis Of Internal Transcribed Spacer (ITS) Regions Of rRNA Genes In Fungal Communities In a Southeastern U.S. Salt Marsh. Microbial Ecology. 43(3): 329-340 (2002).
Major, D.W., McMaster, M.L., Cox, E.E., Edwards, E.A., Dworatzek, S.M., Hendrickson, E.R, Starr, M.G., Payne, J.A., Buonamici, L.W. Field Demonstration Of Successful Bioaugmentation To Achieve Dechlorination Of Tetrachloroethene To Ethene. Environmental Science Technology. 36(23): 5106-5116 (2002).
Takai, K., Hirayama, H., Sakihama, Y., Inagaki, F., Yamato, Y., Horikoshi, K. Isolation and Metabolic Characteristics Of Previously Uncultured Members Of The Order Aquificales In A Subsurface Gold Mine. Applied and Environmental Microbiology. 68(6): 3046-3054 (2002).
Allen, A.E., Booth, M.G., Frischer, M.E., Verity, P.G., Zehr, J.P., Zani, S. Diversity and Detection Of Nitrate Assimilation Genes In Marine Bacteria. Applied and Environmental Microbiology. 67(11): 5343-5348 (2001).
Buchan, A., Neidle, E.L., Moran, M.A. Diversity Of The Ring-Cleaving Dioxygenase Gene pcaH In A Salt Marsh Bacterial Community. Applied and Environmental Microbiology. 67(12): 5801-5809 (2001).
Takai, K., Moser, D.P., DeFlaun, M., Onstott, T.C., Fredrickson, J.K. Archaeal Diversity In Waters From Deep South African Gold Mines. Applied and Environmental Microbiology. 67(12): 5750-5760 (2001).
Takai, K., Komatsu, T., Inagaki, F., Horikoshi, K. Distribution of Archaea In A Black Smoker Chimney Structure. Applied and Environmental Microbiology. 67(8): 3618-3629 (2001).

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Berthrong, S.T., Schadt, C.W., Pineiro, G., and Jackson, R.B. Afforestation Alters the Composition of Functional Genes in Soil and Biogeochemical Processes in South American Grasslands. Applied and Environmental Microbiology. 76(19): 6240-6248 (2009).
Ferrando, L. and Tarlera, S. Activity and Diversity of Methanotrophs in the Soil-water Interface and Rhizospheric Soil from a Flooded Temperate Rice Field. Journal of Applied Microbiology . 106(1): 1364-5072 (2008).
Kennedy, P.G., Bergemann, S.E., Hortal, S., Bruns, T.D. Determining The Outcome Of Field-based Competition Between Two Rhizopogon Species Using Real-time PCR. Molecular Ecology. 16(4): 881-890 (2007).
Kennedy, P.G., Hortal, S., Bergemann, S.E., Bruns, T.D. Competitive Interactions Among Three Ectomycorrhizal Fungi and Their Relation To Host Plant Performance. Journal of Ecology. 95(6): 1338-1345 (2007).
Nadarajah, N., Allen, D.G., Fulthorpe, R.R. Effect Of Transient Temperature Conditions On The Divergence Of Activated Sludge Bacterial Community Structure and Function. Elsevier. 41(12): 2563-2571 (2007).
Whitehouse, C.A., Hottel, H.E. Comparison Of Five Commercial DNA Extraction Kits For The Recovery Of Francisella tularensis DNA From Spike Soil Samples. Molecular and Cellular Probes. 21(2): 92-96 (2007).
Kennedy, P.G., Bruns, T.D. Priority Effect Determine The Outcome Of Ectomycorrhizal Competition Between Two Rhizopogon Species Colonizing Pinus muricata Seedlings. New Phytologist. 166(2): 631-638 (2005).

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Thomas, S.E., Crozier, J., Aime, M.C., Evans, H.C., and Holmes, K.A. Molecular characterization of fungal endophytic morphospecies associated with the indigenous forest tree, Theobroma gileri, in Ecuador. Mycological Research. 112: 852-860 (2008).
Farr, D.F., Aime, M.C., Rossman, A.Y., Palm, M.E. Species Of Colletotrichum On Agavaceae. Science Direct. 110(pt 12): 1395-1408 (2006).
Aime, M.C., Phillips-Mora, W. The Causal Agents Of Witches' Broom and Frosty Pod Rot Of Cacao (Chocolate, Theobroma cacao) Form A New Lineage Of Marasmiaceae. Mycologia. 97(5): 1012-1022 (2005).
Lievens, B., Brouwer, M., Vanachter, A.C.R.C., Levesque, C.A., Cammue, B.P.A., Thomma, B.P.H.J. Quantitative Assessment Of Phytopathogenic Fungi In Various Substrates Using A DNA Macroarray. Environmental Microbiology. 7(11): 1462-2920 (2005).
Lucero, M.E. Barrow, J.R., Osuna, P., Reyes, I. Plant-Fungal Interactions In Arid and Semi-Arid Ecosystems: Large-Scale Impacts From Microscale Processes. Journal of Arid Environments. 65(2): 276-284 (2005).
Lievens, B., Brouwer, M., Vanachter, A.C., Levesque, C.A., Cammue, B.P.A., Thomma, B.P. Design and Development Of A DNA Array For Rapid Detection and Identification Of Multiple Tomato Vascular Wilt Pathogens. FEMS Microbiology Letters. 223(1): 113-122 (2003).

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Perreault, N.N., Andersen, D.T., Pollard, W.H., Greer, C.W., Whyte, L.G. Characterization Of The Prokaryotic Diversity In Cold Saline Perennial Springs Of The Canadian High Artic. Applied and Environmental Microbiology. 73(5): 1532-1543 (2007).
Rosario, K., Iverson, S.L., Henderson, D.A., Chartrand, S., McKeon, C., Glenn, E.P., Maier, R.M. Bacterial Community Changes During Plant Establishment At The San Pedro River Mine Tailings Site. Journal of Environmental Quality. 36(5): 1249-1259 (2007).
Bacchi, C.J., Rattendi, D., Faciane, E., Yarlett, N., Weiss, L.M., Frydman, B., Woster, P., Wei, B., Marton, L.J., Wittner, M. Polyamine Metabolism In A Member Of The Phylum Microspora (Encephalitozoon cuniculi): Effects Of Polyamine Analogues. Microbiology. 150: 1215-1224 (2004).
Simpson, J.M., Santo Domingo, J.W., Reasoner, D.J. Assessment Of Equine Fecal Contamination: The Search For Alternative Bacterial Source-Tracking Targets. FEMS Microbiology Ecology. 47: 65-75 (2004).

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Kardaru, S., Zhang, W., Yadav, A., Oard, J.H. Development and Application Of Allele-Specific PCR Assays For Imazethapyr Resistance in rice (Oryza sativa). Euphytica. 160(3): 431-438 (2008).

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Perreault, N.N., Andersen, D.T., Pollard, W.H., Greer, C.W., Whyte, L.G. Characterization Of The Prokaryotic Diversity In Cold Saline Perennial Springs Of The Canadian High Artic. Applied and Environmental Microbiology. 73(5): 1532-1543 (2007).
Rosario, K., Iverson, S.L., Henderson, D.A., Chartrand, S., McKeon, C., Glenn, E.P., Maier, R.M. Bacterial Community Changes During Plant Establishment At The San Pedro River Mine Tailings Site. Journal of Environmental Quality. 36(5): 1249-1259 (2007).
Bacchi, C.J., Rattendi, D., Faciane, E., Yarlett, N., Weiss, L.M., Frydman, B., Woster, P., Wei, B., Marton, L.J., Wittner, M. Polyamine Metabolism In A Member Of The Phylum Microspora (Encephalitozoon cuniculi): Effects Of Polyamine Analogues. Microbiology. 150: 1215-1224 (2004).

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Wertz, J.T., Breznak, J.A. Physiological Ecology Of Stenoxybacter acetivorans, An Obligate Microaerophile In Termite Guts. Applied and Environmental Microbiology. 73(21): 6829-6841 (2007).
Wilkie, D.C., Van Kessel, A.G., Dumonceaux, T.J., Drew, M.D. The Effect Of Hen-Egg Antibodies On Clostridium perfringens Colonization In The Gastrointestinal Tract Of Broiler Chickens. Preventive Veterinary Medicine. 74(4): 279-292 (2005).
Dumonceaux, T.J., Hill, J.E., Briggs, S.A., Amoakoa, K.K., Hemingsen, S.M., Van Kesse, A.G. Enumeration Of Specific Bacterial Populations In Complex Intestinal Communities Using Quantitative PCR Based On The Chaperonin-60 Target. Journal of Microbiological Methods. 64(1): 46-62 (2006).
Ishii, S., Loynachan, T.E. Rapid and Reliable DNA Extraction Techniques From Trypan-Blue-Stained Mycorrhizal Roots: Comparison Of Two Methods. Mycorrhiza. 14(4): 271-275 (2004).
Krajmalnik-Brown, R., Hölscher, T., Thomson, I.N., Saunders, F.M., Ritalahti, K.M., Löffler, F.E. Genetic Identification Of A Putative Vinyl Chloride Reductase In Dehalococcoides sp. Strain BAV1. Applied and Environmental Microbiology. 70(10): 6347-6351 (2004).

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Samuels, G.J., Lu, B-S., Chaverri, P., Candoussau, F., Fournier, J., and Rossman, A.Y. Cyanonextria ad New Genus for Nectria cyanostoma and its Fusarium Anamorph. Mycological Progress. 8(1): 49-58 (2009).
Desalvo, M.K., Voolstra, C.R., Sunagawa, S., Schwarz, J.A., Stillman, J.H., Coffroth, M.A., Szmant, A.M., and Medina, M. Differential gene expression during thermal stress and bleaching in the Caribbean coral Montastraea faveolata. Molecular Ecology. 17: 3952-3971 (2008).

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Larson-Rabin, Z., Li, Z., Masson, P.H., and Day, C.D. FZR2/CCS52A1 is a Determinant of Endoreduplication and Cell Expansion in ^{1 [W][OA]/}. Plant Physiology. 149: 874-884 (2009).
Mortimer-Jones, A.M., Jones, M.G.K., Jones, R.A.C., Thomas, G., and Dwyer, G.I. A Single Tube, Quantitative Real-time RT-PCR Assay that Detects Four Potato Viruses Simultaneously. Journal of Virological Methods. (2009).
Tan, F.C., Swain, S.M. Functional Characterization Of AP3, SOC1 and WUS Homologues From Citrus (Citrus sinensis). Physiologia Plantarum. 131(3): 481-495 (2007).

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Blankenship, L.E., Yayanos, A.A. Universal Primers and PCR of Gut Contents to Study Marine Invertebrate Diets. Molecular Ecology. 14: 891-899 (2005).
Chaverri, P., Bischoff, J.F., Evans, H.C., Hodge, K.T. Regiocrella, a New Entomopathogenic Genus with a Pycnidial Anamorph and its Phylogenetic Placement in the Clavicipitaceae. Mycologia. 97(6): 1225-1237 (2005).

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Sercu, B., Van De Werdhorst, L.C., Murray, J., and Holden, P.A. Storm Drains are Sources of Human Fecal Pollution During Dry Weather in Three Urban Southern California Watersheds. Environmental Science and Technology. 43(2): 293-298 (2009).
Lievens, B., Brouwer, M., Vanachter, A.C., Lévesque, C.A., Cammue, B.P., Thomma, B.P. Quantitative Assessment Of Phytopathogenic Fungi In Various Substrates Using A DNA Macroarray. Environmental Microbiology. 7(11): 1698-1710 (2005).
Newby, D.T., Reed, D.W., Petzke, L.M., Igoe, A.L., Delwiche, M.E., Roberto, F.F., McKinley, J.P., Whiticar, M.J., Colwell, F.S. Diversity Of Methanotroph Communities In A Basalt Aquifer. FEMS Microbiology Ecology. 48(3): 333-344 (2004).
Vora, G.J., Meador, C.E., Stenger, D.A., Andreadis, J.D. Nucleic Acid Amplification Strategies For DNA Microarray-Based Pathogen Detection. Applied and Environmental Microbiology. 70(5): 3047-3054 (2004).
Ibekwe, A.M., Grieve, C.M., Lyon, S.R. Characterization Of Microbial Communities and Composition In Constructed Dairy Wetland Wastewater Effluent. Applied and Environmental Microbiology. 6(9): 5060-5069 (2003).
Lievens, B., Brouwer, M., Vanachter, A.C., Lévesque, C.A., Cammue, B.P., Thomma, B.P. Design and Development Of A DNA Array For Rapid Detection and Identification Of Multiple Tomato Vascular Wilt Pathogens. FEMS Microbiology Letters 223(1): 113-122 (2003).
Ibekwe, A.M., Watt, P.M., Grieve, C.M., Sharma, V.K., Lyons, S.R. Multiplex Fluorogenic Real-Time PCR For Detection and Quantification Of Escherichia coli O157:H7 In Dairy Wastewater Wetlands. Applied and Environmental Microbiology. 68(10): 4853-4862 (2002).

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Van De Werfhorst*, L.C., Sercu, B., and Holden, P.A. Comparison of the Host Specificities of Two Bacteroidales Quantitative PCR Assays Used for Tracking Human Fecal Contamination. Applied and Environmental Microbiology. 77(17): 6258-6260 (2011).
McBeth, J., Little, B., Ray, R., Farrar, K., and Emerson, D. Neutrophilic Iron-Oxidizing “Zetaproteobacteria” and Mild Steel Corrosion in Nearshore Marine Environments. Applied and Environmental Microbiology. 77(4): 1405-1412 (2010).

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Prabha, S. and Verghese, S. Existence of Proviral Porcine Endogenous Retrovirus in Fresh and Decellularised Porcine Tissues. Indian Journal of Medical Microbiology. 26(3): 228-232 (2008).
Endara, P., Trueba, G., Solberg, O.D., Bates, S.J., Ponce, K., Cevallos, W., Matthijnssens, J., Eisenberg, J.N. Symptomatic and Subclinical Infection With Rotavirus P[8]G9, Rural Ecuador. Emerging Infectious Diseases. 13(4): 574-80 (2007).
Blesa, S., Cortijo, J., Mata, M., Serrano, A., Closa, D., Santangelo, F., Estrela, J.M., Suchankova, J., Morcillo. E.J. Oral N-acetylcysteine Attenuates The Rat Pulmonary Inflammatory Response To Antigen. European Respiratory Journal. 21(3): 394-400 (2003).

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Zhang, W., Jayarao, B.M., Knabel, S.J. Multi-Virulence-Locus Sequence Typing Of Listeria monocytogenes. Applied and Environmental Microbiology. 70(2): 913-920 (2004).

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Toh, S.M., Xiong, L., Bae, T., Mankin, A.S. The Methyltransferase YfgB/RlmN Is Responsible For Modification Of Adenosine 2503 In 23S rRNA. RNA. 14(1): 98-106 (2008).
Poulain, A.J., Ní Chadhain, S.M., Ariya, P.A., Amyot, M., Garcia, E., Campbell, P.G., Zylstra, G.J., Barkay, T. Potential For Mercury Reduction By Microbes In The High Arctic. Applied and Environmenal Microbiology. 73(7): 2230-2238 (2007).
Toh, S.M., Xiong, L., Arias, C.A., Villegas, M.V., Lolans, K., Quinn, J., Mankin, A.S. Acquisition Of A Natural Resistance Gene Renders A Clinical Strain Of Methicillin-Resistant Staphylococcus aureus Resistant To the Synthetic Antibiotic Linezolid. Molecular Microbiology. 64(6): 1506-1514 (2007).
Johnson, D.R., Lee, P.K.H., Holmes, V.F., Alvarez-Cohen, L. An Internal Reference Technique For Accurately Quantifying Specific mRNAs By Real-Time PCR With Application To The tceA Reductive Dehalogenase Gene. Applied and Environmetal Microbiolog. 71(7): 3866-3871 (2005).

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Bulat, S.A., Alekhina, I.A., Blot, M., Petit, J.R., de Angelis, M., Wagenbach, D., Lipenkov, V.Y., Vasilyes, L.P., Wloch, D.M., Raynaud, D., Lukin, V.V. DNA Signature of Themophilic Bacteria from the Aged Accretion Ice of Lake Vostok, Antarctica: Implications for Searching for Life in Extreme Icy Environments. International Journal of Astrobiologu. 3(1): 1-12 (2004).

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