References - Publications
Listing of scientific publications referencing MO BIO products.
- Zhang, L., Srinivasan, U., Marrs, C.F., Ghosh, D., Gilsdorf, J.R., Foxman, B. Library On A Slide For Bacterial Comparative Genomics. BMC Microbiology. 4(12) (2004).
- Dandie, C.E., Miller, M.N., Burton, D.L., Zebarth, B.J., Trevors, J.T., Goyer, C. Nitric Oxide Reductase-Targeted Real-Time PCR Quantification Of Denitrifier Populations In Soil. Applied Environmental Microbiology. 73(13): 4250-4258 (2007).
- Kazuya Ishikawa, Kensaku Maejima, Ken Komatsu, Yugo Kitazawa, Masayoshi Hashimoto, Daisuke Takata, Yasuyuki Yamaji, and Shigetou Namba. Identification and characterization of two novel genomic RNA segments of fig mosaic virus, RNA5 and RNA6. J. Gen. Virol., Jul 2012; 93: 1612 - 1619.
- Saar, I., Poldmaa, K., and Koljalg, U. The Phylogeny and Taxonomy of Genera Cystoderma and Cystodermella (Agaricales) Based on Nuclear ITS and LSU Sequences . Mycological Pregress. 8(1): 59-73 (2009).
- Vukovi, J., Ruitenberg, M.J., Roet, K., Fransse, E., Arulpragasam, A., Sasaki, T., Verhaagen, J., Harvey A.R., Busfield, S.J., and Plant, G.W. The Glycoprotein Fibulin-3 Regulates Morphology and Motility of Olfactory Ensheathing Cells In Vitro. Glia. 57(4): 424-443 (2009).
- Boga, J.A., Melón, S., Nicieza, I., de Diego, I., Villar, M., Parra, F., de Oña, M. Etiology Of Sporadic Cases Of Pediatric Acute Gastroenteritis In Asturias, Spain, and Genotyping and Characterization Of Norovirus Strains Involved. Journal of Clinical Microbiology. 42(6): 2668-2674 (2004).
- Clarke, B.R., Cuthbertson, L., Whitfield, C. Nonreducing Terminal Modifications Determine The Chain Length Of Polymannose O Antigens Of Escherichia coli and Couple Chain Termination To Polymer Export Via An ATP-Binding Cassette Transporter. The Journal of Biological Chemistry. 279(34): 35709-35718 (2004).
- Fernandez, P., Carretero, J., Medina, P.P., Jimenez, A.I., Rodriguez-Perales, S., Paz, M.F., Cigudosa, J.C., Esteller, M., Lombardia, L., Morente, M., Sanchez-Verde, L., Sotelo, T., Sanchez-Cespedes, M. Distinctive Gene Expression Of Human Lung Adenocarcinomas Carrying LKB1 Mutations. Oncogene. 23(29): 5084-5091 (2004).
- Hara, T., Ishida, H., Raziuddin, R., Dorkhom, S., Kamijo, K., Miki, T. Novel Kelch-Like Protein, KLEIP, Is Involved In Actin Assembly At Cell-Cell Contact Sites Of Madin-Darby Canine Kidney Cells. Molecular Biology of the Cell. 15(3): 1172-1184 (2004).
- Kaniuk, N.A., Vinogradov, E., Li, J., Monteiro, M.A., C. Whitfield, C. Chromosomal and Plasmid-encoded Enzymes Are Required For Assembly Of The R3-type Core Oligosaccharide In The Lipopolysaccharide Of Escherichia coli O157:H7. The Journal of Biological Chemistry. 279(30): 31237-31250 (2004).
- Kiefel, B.R., Gilson, P.R., Beech, P.L. Diverse Eukaryotes Have Retained Mitochondrial Homologues Of The Bacterial Division Protein FtsZ. Protist. 155(1): 105-115 (2004).
- Miller, W.L., Wenzel, C.Q., Daniels, C., Larocque, S., Brisson, J.R., Lam, J.S. Biochemical Characterization Of WbpA, A UDP-N-acetyl-D-glucosamine 6-Dehydrogenase Involved In O-antigen Biosynthesis In Pseudomonas aeruginosa PAO1. The Journal of Biological Chemistry. 279(36): 37551-37558 (2004).
- Summerscales, J.E., Josephy, P.D. Human Acetyl CoA: Arylamine N-Acetyltransferase Variants Generated By Random Mutagenesis. Molecular Pharmacology. 65(1): 220-226 (2004).
- Zhang, Y., Champagne, N., Beitel, L.K., Goodyer, C.G., Trifiro, M., LeBlanc, A. Estrogen and Androgen Protection Of Human Neurons Against Intracellular Amyloid Beta1-42 Toxicity Through Heat Shock Protein 70. Journal of Neuroscience. 24(23): 5315-5321 (2004).
- Adamson, T., Price, D. Cotranscriptional Processing Of Drosophila Histone mRNAs. Molecular and Cellular Biology. 23(12): 4046-4055 (2003).
- Gomes, N.C.M., Fagbola, O., Costa, R., Rumjanek, N.G., Buchner, A., Mendona-Hagler, L., Smalla, K. Dynamics Of Fungal Communities In Bulk and Maize Rhizosphere Soil In The Tropics. Applied and Environmental Microbiology. 69(7): 3758-3766 (2003).
- Krüger, R., Filutowicz, M. pi Protein- and ATP-Dependent Transitions From 'Closed' To 'Open' Complexes At The gamma ori Of Plasmid R6K. Nucleic Acids Research. 31(20): 5993-6003 (2003).
- Lebrecht, D., Setzer, B., Ketelsen, U.P., Haberstroh, J., Walker, U.A. Time-Dependent and Tissue-Specific Accumulation Of mtDNA and Respiratory Chain Defects In Chronic Doxorubicin Cardiomyothapy. Circulation. 108(19): 2423-2429 (2003).
- Matthias, K., Kirchhoff, F., Seifert, G., Hüttmann, K., Matyash, M., Kettenmann, H., Steinhäuser, C. Segregated Expression Of AMPA-Type Glutamate Receptors and Glutamate Transporters Defines Distinct Astrocyte Populations In The Mouse Hippocampus. Journal of Neuroscience. 23(5): 1750-1758 (2003).
- Partridge, S.R., Hall, R.M. In34, A Complex In5 Family Class 1 Integron Containing orf513 and dfrA10. Antimicrobial Agents and Chemotherapy. 47(1): 342-349 (2003).
- Partridge, S.R., Hall, R.M. The IS1111 Family Members IS4321 and IS5075 Have Subterminal Inverted Repeats and Target the Terminal Inverted Repeats Of Tn21 Family Transposons. Journal of Bacteriology. 185(21): 6371-6384 (2003).
- Rios-Hernandez, L.A., Gieg, L.M., Suflita, J.M. Biodegradation Of An Alicyclic Hydrocarbon By A Sulfate-Reducing Enrichment From A Gas Condensate-Contaminated Aquifer. Applied and Environmental Microbiology. 69(1): 434-443 (2003).
- Rodríguez-Antona, C., Bort, R., Jover, R., Tindberg, N., Ingelman-Sundberg, M., Gómez-Lechón, M.J., Castell, J.V. Transcriptional Regulation Of Human CYP3A4 Basal Expression By CCAAT Enhancer-Binding Protein alpha and Hepatocyte Nuclear Factor-3 gamma. Molecular Pharmacology. 63(5): 1180-1189 (2003).
- Seguritan, V., Feng, I.W., Rohwer, F., Swift, M., Segall, A.M. Genome Sequences Of Two Closely Related Vibrio parahaemolyticus Phages, VP16T and VP16C. Journal of Bacteriology. 185(21): 6434-6447 (2003).
- Vellani, T., Myers, R. Bacteriophage SPP1 Chu Is An Alkaline Exonuclease In The SynExo Family Of Viral Two-Component Recombinases. Journal of Bacteriology. 185(8): 2465-2474 (2003).
- Zhang, Y., Hong, Y., Bounhar, Y., Blacker, M., Roucou, X., Tounekti, O., Vereker, E., Bowers, W.J., Federoff, H.J., Goodyer, C.G., LeBlanc, A. p75 Neurotrophin Receptor Protects Primary Cultures Of Human Neurons Against Extracellular Amyloid Beta Peptide Cytotoxicity. Journal of Neuroscience. 23(19): 7385-7394(2003).
- Brofft, J.E., McArthur, J.V., Shimkets, L.J. Recovery Of Novel Bacterial Diversity From A Forested Wetland Impacted By Reject Coal. Environmental Microbiology. 4(11): 764-769 (2002).
- Chan, R., Baldwin, B.G., Ornduff, R. Cryptic Goldfields: A Molecular Phylogenetic Reinvestigation Of Lasthenia californica sensu lato and Close Relatives (Compositae: Heliantheae sensu lato). American Journal of Botany. 89(7): 1103-1112 (2002).
- Huang, Y.C., Colman, R.F. Evaluation By Mutagenesis Of The Roles Of His309, His315, and His319 In The Coenzyme Site Of Pig Heart NADP-Dependent Isocitrate Dehydrogenase. Biochemistry. 41(17): 5637-5643 (2002).
- McCormick, S., Alexander, N. Fusarium Tri8 Encodes A Trichothecene C-3 Esterase. Applied and Environmental Microbiology. 68(6): 2959-2964 (2002).
- Potaman, V.N., Lushnikov, A.Y., Sinden, R.R., Lyubchenko, Y.L. Site-Specific Labeling Of Supercoiled DNA At The A+T Rich Sequences. Biochemistry. 41(44): 13198-13206 (2002).
- Soldatenkov, V.A., Chasovskikh, S., Potaman, V.N., Trofimova, I., Smulson, M.E., Dritschilo, A. Transcriptional Repression By Binding Of Poly(ADP-ribose) Polymerase To Promoter Sequences. The Journal of Biological Chemistry. 277(1): 665-670 (2002).
- Cervelli, M., Cona, A., Angelini, R., Polticelli, F., Federico, R., Mariottini, P. A Barley Polyamine Oxidase Isoform With Distinct Structural Features and Subcellular Localization. European Journal of Biochemistry. 268(13): 3816-3830 (2001).
- Goodin, M.M., Austin, J., Tobias, R., Fujita, M., Morales, C., Jackson, A.O. Interactions and Nuclear Import Of The N and P Proteins Of Sonchus Yellow Net Virus, A Plant Nucleorhabdovirus. Journal of Virology. 75(19): 9393-9406 (2001).
- Grigg, M., Boothroyd, J. C. Rapid Identification Of Virulent Type I Strains Of The Protozoan Pathogen Toxoplasma gondii By PCR-Restriction Fragment Length Polymorphism Analysis At The B1 Gene. Journal of Clinical Microbiology. 39(1): 398-400 (2001).
- Grigg, M.E., Bonnefoy, S., Hehl, A.B., Suzuki, Y., Boothroyd, J.C. Success and Virulence In Toxoplasma As The Result Of Sexual Recombination Between Two Distinct Ancestries. Science. 294(5540): 161-165 (2001).
- Ito, N., Takayama, M., Yamada, K. Sugiyama, M., Minamoto, N. Rescue Of Rabies Virus From Cloned cDNA and Identification Of The Pathogenicity-Related Gene: Glycoprotein Gene Is Associated With Virulence For Adult Mice. Journal of Virology. 75(19): 9121-9128 (2001).
- Kanamaru, K., Nagashima, A., Fujiwara, M., Shimada, H., Shirano, Y., Nakabayashi, K., Shibata, D., Tanaka, K., Takahashi, H. An Arabidopsis Sigma Factor (SIG2)-Dependent Expression Of Plastid-Encoded tRNAs In Chloroplasts. Plant Cell Physiology. 42(10): 1034-1043 (2001).
- Krüger, R., Konieczny, I., Filutowicz, M. Monomer/Dimer Ratios Of Replication Protein Modulate The DNA Strand-Opening In A Replication Origin. Journal of Molecular Biology. 306(5): 945-955 (2001).
- Ohyama, K., Enn, P., Uchide, N., Bessho, T., Yamakawa, T. Improvement of Separation Method Of Fragmented DNA From An Apoptotic Cell DNA Sample For The Quantification Using Agarose Gel Electrophoresis. Biological & Pharmaceutical Bulletin. 24(4): 342-346 (2001).
- Oussatcheva, E.A., Hashem, V.I., Zou, Y., Sinden, R.R., Potaman, V.N. Involvement Of The Nucleotide Excision Repair Protein UvrA In Instability Of CAG*CTG Repeat Sequences In Escherichia coli. The Journal of Biological Chemistry. 276(33): 30878-30884 (2001).
- Desjardins, A.E., Bai, G., Plattner, R.D., Proctor, R.H. Analysis Of Aberrant Virulence Of Gibberella zeae Following Transformation-Mediated Complementation Of A Trichothecene-Deficient (Tri5) Mutant. Microbiology. 146: 2059-2068 (2000).
- Grodsky, N.B., Soundar, S., Colman, R.F. Chloroplast Targeting, Distribution and Transcriptional Fluctuation Of AtMinD1, a Eubacteria-Type Factor Critical For Chloroplast Division. Plant Cell Physiology. 41(10): 1119-1128 (2000).
- Li, Y., Pursell, Z.F., Linn, S. Identification and Cloning Of Two Histone Fold Motif-Containing Subunits Of HeLA DNA Polymerase. The Journal of Biological Chemistry. 275(30): 23247-23252 (2000).
- Shlyakhtenko, L., Potaman, V., Sinden, R., Gall, A. Y. Lyubchenko, Y. Structure and Dynamics Of Three-way DNA Junctions: Atomic Force Microscopy Studies. Nucleic Acids Research. 28(18): 3472-3477 (2000).
- Soundar, S., Danek, B.L., Colman, R.F. Identification By Mutagenesis Of Arginines In The Substrate Binding Site Of The Porcine NADP-dependent Isocitrate Dehydrogenase. The Journal of Biological Chemistry. 275(8): 5606-5612 (2000).
- Sugino, H., Terakawa, Y., Yamasaki, A., Nakamura, K., Higuchi, Y., Matsubara, J., Kuniyoshi, H., Ikegami, S. Molecular Characterization Of A Novel Nuclear Transglutaminase That Is Expressed During Starfish Embryogenesis. European Journal of Biochemistry. 269(7): 1957-1967 (2000).
- Chauhan, M.S., Nadir, S., Bailey, T.L., Pryor, A.W., Butler, S.P., Notter, D.R., Velander, W.H., Gwazdauskas, F.C. Bovine Follicular Dynamics, Oocyte Recovery, and Development Of Oocytes Microinjected With A Green Fluorescent Protein Construct. Journal of Dairy Science. 82(5): 918-926 (1999).
- Johnson, E., Mincer, T., Schwab, H., Burgin, A., Helinski, D. Plasmid RK2 ParB Protein: Purification and Nuclease Properties. Journal of Bacteriology. 181(19): 6010-6018 (1999).
- Dojka, M.A., Hugenholtz, P., Haack, S.K., Pace, N.R. Microbial Diversity In A Hydrocarbon- and Chlorinated-Solvent-Contaminated Aquifer Undergoing Intrinsic Bioremediation. Applied and Environmental Microbiology. 64(10): 3869-3877 (1998).
- Hugenholtz, P., Pitulle, C., Hershberger, K.L., Pace, N.R. Novel Division Level Bacterial Diversity In A Yellowstone Hot Spring. Journal of Bacteriology. 180(2): 366-376 (1998).
- Peter, B.J., Ullsperger, C., Hiasa, H., Marians, K.J., Cozzarelli, N.R. The Structure Of Supercoiled Intermediates In DNA Replication. Cell. 94(6): 819-827 (1998).
- Lees-Miller, J.P., Kondo, C., Wang, L., Duff, H.J. Electrophysiological Characterization Of An Alternatively Processed ERG K+ Channel In Mouse and Human Hearts. Circulation Research. 81(5): 719-726 (1997).
- Li, Y., Asahara, H., Patel, V.S., Zhou, S., Linn, S. Purification, cDNA Cloning, and Gene Mapping Of The Small Subunit Of Human DNA Polymerase epsilon. The Journal of Biological Chemistry. 272(51): 32337-32344 (1997).
- Bui, C.T., Lambrinakos, A., Babon, J.J., Cotton, R.G. Chemical Cleavage Reactions Of DNA On Solid Support: Application In Mutation Detection. BMC Chemical Biology 3(1): 1 (2003).
- Butchko, R.A., Plattner, R.D., Proctor, R.H. FUM13 Encodes a Short Chain Dehydrogenase/Reductase Required For C-3 Carbonyl Reduction During Fumonisin Biosynthesis In Gibberella moniliformis. Journal of Agricultral and Food Chemistry. 51(10): 3000-3006 (2003).
- Kaplan, C.W., Kitts, C.L. Bacterial Succession In A Petroleum Land Treatment Unit. Applied and Environmental Microbiology. 70(3): 1777-1786 (2004).
- Kalivoda, K.A., Steenbergen, S.M., Vimr, E.R., Plumbridge, J. Regulation Of Sialic Acid Catabolism By The DNA Binding Protein NanR Escherichia coli. Journal of Bacteriology. 185(16): 4806-4815 (2003).
- De Capdeville, G., Wilson, C.L., Beer, S.V., and Aist, J.R. Alternative Disease Control Agent Induce Resistance to Blue Mold in Harvested “Red Delicious” Apple Fruit. Biological Control. 900-908 (2002).
- Nirmal K. Banda, Stephanie Hyatt, Alexandra H. Antonioli, Jason T. White, Magdalena Glogowska, Kazue Takahashi, Tod J. Merkel, Gregory L. Stahl, Stacey Mueller-Ortiz, Rick Wetsel, William P. Arend, and V. Michael Holers. Role of C3a Receptors, C5a Receptors, and Complement Protein C6 Deficiency in Collagen Antibody-Induced Arthritis in Mice. J. Immunol., Feb 2012; 188: 1469 – 1478.
- Queipo-Ortuño, M.I., Tena, F., Colmenero, J.D., Morata, P. Comparison Of Seven Commercial DNA Extraction Kits For The Recovery Of Brucella DNA From Spiked Human Serum Samples Using Real-Time PCR. European Journal of Clinical Microbiology & Infectious. 27(2): 109-114 (2008).
- Chang, J.H., Hampartzoumian, T, Everett, B., Lloyd, A., McCluskey, P.J., Wakefield, D. Changes In Toll-Like Receptor (TLR)-2 and TLR4 Expression and Function But Not Polymorphisms Are Associated With Acute Anterior Uveitis. Investigative Ophthalmology & Visual Science. 48(4): 1711-1717 (2007).
- Valiante, S., Prisco, M., Capaldo, A., Zambrano, I., De Falco, M., Andreuccetti, P., Laforgia, V., Varano, L. Molecular Characterization and Gene Expression Of The Pituitary Adenylate Cyclase-Activating Polypeptide (PACAP) In The Lizard Brain. Brain Research. 1127: 66-75.(2007).
- Navarro, E., Segura, J.C., Castaño, M.J., Solera, J. Use Of Real-Time Quantitative Polymerase Chain Reaction To Monitor The Evolution Of Brucella melitensis DNA Load During Therapy and Post-Therapy Follow-Up In Patients With Brucellosis. Clinical Infectious Diseases. 42(9): 1266-1273 (2006).
- Parr, R.L., Dakubo, G.D., Crandall, K.A., Maki, J., Reguly, B., Aguirre, A., Wittock, R., Robinson, K., Alexander, J.S., Birch-Machin, M.A., Abdel-Malak, M., Frober, M.K., Diamandis, E.P., and Thayer, R.E. Somatic Mitochondrial DNA Mutations in Prostate Cancer and Normal Appearing Adjacent Glands in Comparison to Age-Matched Prostate Samples without Malignant Histology. Journal of Molecular Diagnostics. 8(3): 312-319 (2006).
- Serý, O., Didden, W., Mikes, V., Pitelová, R., Znojil, V., Zvolský, P. The Association Between High-Activity COMT Allele and Alcoholism. Neuro Endocrinology Lett. 27(1-2):231-235 (2006).
- Kasparovska, J., Hribkova, H., Hlouskova, R., Novotny, M., Glaskova, K., Simek, V., Mikes, V., Zvolsky, P., Sery, O. TaqI A Polymorphism Of The DRD2 Gene and Alcoholism In The Czech Republic. Ceska A Slovenska Psychiatrie. 99(1): 5-9 (2003).
- Sery, O., Hladilova, R., Novotny, M., V. Znojil, V., P. Zvolsky, P. Polymorfismus genu pro IL-6 ma vztah k dispozicim k zavislosti na alkoholu. Ceska a Slovenska Psychiatrie. 99(4): 5-9 (2003
- Sery, O., Hladilova, R., Novotny, M., Hribkova, H., Znojil, V., Zvolsky, P., Association Between -174 G/C Polymorphism Of Interleukin-6 Gene and Alcoholism. Acta Neuropsychiatrica. 15(5): 257-261 (2003).
- L. Quigley, O. O’Sullivan, T.P. Beresford, R. Paul Ross, G.F. Fitzgerald and P.D. Cotter. A comparison of methods used to extract bacterial DNA from raw milk and raw milk cheese. Journal of Applied Microbiology, 24 APR 2012; 113(1): 96-105.
- Johana Husserl, Joseph B. Hughes, and Jim C. Spain. Key Enzymes Enabling the Growth of Arthrobacter sp. Strain JBH1 with Nitroglycerin as the Sole Source of Carbon and Nitrogen. Appl. Envir. Microbiol., May 2012; 78: 3649 – 3655.
- Kathryn A. Harris, Dervla T. D. Kenna, Cornelis Blauwendraat, John C. Hartley, Jane F. Turton, Paul Aurora, and Garth L. J. Dixon. Molecular Fingerprinting of Mycobacterium abscessus Strains in a Cohort of Pediatric Cystic Fibrosis Patients. J. Clin. Microbiol., May 2012; 50: 1758 – 1761.
- Beare, P.A., Unsworth, N., Andoh, M., Voth, D.E., Omsland, A., Gilk, S.D., Williams, K.P., Sobral, B.W., Kupko III, J.J., Porcella, S.F., Samuel, J.E., and Heinzen, R.A. Comparative Genomics Reveal Extensive Transposon-Mediated Genomic Plasticity and Diversity amoing Potential Effector Proteins within the Genus Coxiella. Infection and Immunity. 77(2): 642-656 (2009).
- Chen, Y., Zhang, W., and Knabel, S.J. Multi-Virulence-Locus Sequence Typing Clarifies Epidemiology of Recent Listeriosis Outbreaks in the United States. Journal of Clinical Microbiology. 43(10): 5291-5294 (2009).
- Dauphin, L.A., Moser, B.D., and Bowen, M.D. Evaluation of Five Commercial Nucleic Acid Extraction Kits for their Ability to Inactive Bacillus anthracis Spores and Comparison of DNA Yields from Spores and Spiked Environmental Samples. Journal of Microbiological Methods. 76(1): 30-37 (2009).
- Hguyen, H.D.T., and Seifert, K.A. Description and DNA Barcoding of Three New Species of Leohumicola from South Africa and the United States. Persoonia. 21: 57-69 (2009).
- Jacobs, M.R., Bajaksouzian, S., Bonomo, R.A., Good, C.E., Windau, A.R., Hujer, A.M., Massire, C., Melton, R., Blyn, L.B., Ecker, D.J., and Sampath, R. Occureneces, Distribution, and Origins of Streptococcus pneumoniae Serotype 6C, a recently Recongnized Serotype. Journal of Clinical Microbiology. 47(1): 64-72 (2009).
- Miteva, V., Teacher, C., Sowers, T., and Brenchley, J. Comparison of the Microbial Diversity at Different Depths of the GISP2 Greenland Ice Core in Relationship to Deposition Climates. Environmental Microbiology. 11(3): 640-656 (2009).
- Shnit-Orland, M. and Kushmaro, A. Coral Mucus-associated Bacteria: A Possible First Line of Defense. FEMS Microbiology Ecology. 67(3): 371-380 (2009).
- Siristova, L., Melzoch, K., and Rezanka, T. Fatty Acids, Unusual Glycophospholipids and DNA Analyses of Thermophilic Bacteria Isolated from Hot Springs. Extremophiles. 13(1):101-109 (2009).
- Podolich, O., Laschevskyy, V., Ovcharenko, L., Kozyrovska, N., and Pirttila, A.M. Methylobacterium sp. Resides in Unculturable State in Potato Tissues In vitro and becomes Culturable after Induction by Pseudomonas fluorescens IMG163. Journal of Applied Microbiology. 106(3): 728-737 (2009).
- Wise, M.G., Siragusa, G.R., Plimbee, J., Healy, M., Cray, P.J., and Seal, B.S. Predicting Salmonella enterica Serotypes by Repetitive Sequence-based PCR. Journal of Microbiological Methods. 76(1): 18-24 (2009).
- Badali, H., Gueidan, C., Najafzadeh, M.J., Bonifaz, A., Gerrits van den Ende, A.H.G., de Hoong, G.S. Biodiversity of the genus Cladophialophora. Studies in Mycology. 61: 175-191 (2008).
- Cheewangkoon, R., Crous, P.W., Hyde, K.D., Groenewald, J.Z., and To-anan, C. Species of Mycosphaerella and Related Anamorphs on Eucalyptus Leaves from Thailand. Persoonia. 21: 77-91 (2008).
- Crous, P.W., Wood, A.R., Okada, G., and Groenewald, J.Z. Foliicolous Microfungi Occurring on Encephalartos. Personnia. 21: 135-146 (2008).
- Dandie, C.E., Miller, M.N., Burton, D.L., Zebarth, B.J., Trevors, J.T., Goyer, C. Nitric Oxide Reductase-Targeted Real-Time PCR Quantification Of Denitrifier Populations In Soil. Applied Environmental Microbiology. 73(13): 4250-4258 (2007).
- Fernandez-Delgado, M., Contreras, M., Garcia-Amado, M.A., Gueneau, P., Suarez, P. Occurrences Of Proteus mirabilis Associated With Two Species Of Venezuelan Oyster. Revista Do Instituto de Medicina Tropical de Sao Paulo. 49(6): 355-359 (2007).
- Lekberg, Y., Koide, R.T., Rohr, J.R., Aldrich-Wolfe, L., Morton, J.B. Role Of Niche Restrictions and Dispersal In The Composition Of Arbuscular Mycorrhizal Fungal Communities. Journal of Ecology. 95(1): 95-105 (2007).
- Luna, R.A., Fasciano, L.R., Jones, S.C., Boyanton, B.L., Ton, T.T., Versalovic, J. DNA Pyrosequencing-Based Bacterial Pathogen Identification In A Pediatric Hospital Setting. Journal of Clinical Microbiology. 45(9): 2985-2992 (2007).
- Weber, C. F., King, G.M. Physiological, Ecological, and Phylogenetic Characterization Of Stappia, A Marine CO-Oxidizing Bacterial Genus. Applied and Environmental Microbiology. 73(4): 1266-1276 (2007).
- Mannisto, M.K, Haggblom, M.M. Characterization Of Psychrotolerant Heterotrophic Bacteria From Finnish Lapland. System and Applied Microbiology. 29(3): 229-243 (2006).
- Fajardo-Cavazos, P., Link. L., Melosh, H.J., Nicholson, W.L. Bacillus subtilis Spores On Artificial Meteorites Survive Hypervelocity Atmospheric Entry: Implications For Lithopanspermia. Astrobiology. 5(6): 726-736 (2005).
- Koide, R.T. Nucleic Acid Isolation From Ecological Samples – Fungal Associations, Mycorrhizae. Methods in Enzymology. 395: 58-72 (2005).
- Cangelosi, G.A., Freeman, R.J., Lewis, K.N., Livingston-Rosanoff, D., Shah, K.S., Milan, S.J., Goldberg, S.V. Evaluation Of A High-Throughput Repetitive-Sequence-Based PCR System For DNA Fingerprinting Of Mycobacterium tuberculosis and Mycobacterium avium Complex Strains. Journal of Clinical Microbiology. 42(6): 2685-2693 (2004).
- Castro, V.A., Thrasher, A.N., Healy, M., Ott, C.M., Pierson, D.L. Microbial Characterization During The Early Habitation Of The International Space Station. Microbial Ecology. 47(2): 119-126 (2004).
- Gira, A.K., Reisenauer, A.H., Hammock, L., Nadiminti, U., Macy, J.T., Reeves, A., Burnett, C., Yakrus, M.A., Toney, S., Jensen, B.J., Blumberg, H.M., Caughman, S.W., Nolte, F.S. Furunculosis Due To Mycobacterium mageritense Associated With Footbaths At A Nail Salon. Journal of Clinical Microbiology. 42(4): 1813-1817 (2004).
- Gonzalez, B.E., Martinez-Aguilar, G., Mason, E.O.Jr., Kaplan, S.L. Azithromycin Compared With beta-Lactam Antibiotic Treatment Failures In Pneumococcal Infections Of Children. The Pediatric Infectious Disease Journal. 23(5): 399-405 (2004).
- Gonzalez, B.E., Hulten, K.G., Kaplan, S.L., Mason, E.O.Jr., The U.S. Pediatric Multicenter Pneumococcal Surveillance Study Group. Clonality Of Streptococcus pneumoniae Serotype 1 Isolates From Pediatric Patients In The United States. Journal of Clinical Microbiology. 42(6): 2810-2812 (2004).
- Healy, M., Reece, K., Walton, D., Huong, J., Shah, K., and Konotoyiannis, D.P. Identification To The Species Level and Differentiation Between Strains Of Aspergillus Clinical Isolates By Automated Repetitive-Sequence-Based PCR. Journal of Clinical Microbiology. 24(9): 4016-4024 (2004).
- Ishii, S., Loynachan, T.E. Rapid and Reliable DNA Extraction Techniques From Trypan-Blue-Stained Mycorrhizal Roots: Comparison Of Two Methods. Mycorrhiza. 14(4): 271-275 (2004).
- Johnston, L.M., Jaykus, L.A. Antimicrobial Resistance Of Enterococcus Species Isolated From Produce. Applied and Environmental Microbiology. 70(5): 3133-3137 (2004).
- Pena, J.A., Li, S.Y., Wilson, P.H., Thibodeau, S.A., Szary, A.J., Versalovic, J. Genotypic and Phenotypic Studies Of Murine Intestinal Lactobacilli: Species Differences In Mice With and Without Colitis. Applied and Environmental Microbiology. 70(1): 558-568 (2004).
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- Stevenson, B.S., Eichorst, S.A., Wertz, J.T., Schmidt, T.M., Breznak, J.A. New Strategies For Cultivation and Detection Of Previously Uncultured Microbes. Applied and Environmental Microbiology. 70(8): 4748-4755 (2004).
- Stres, B., Mahne, I., Avgustin, G., Tiedje, J.M. Nitrous Oxide Reductase (nosZ) Gene Fragments Differ Between Native and Cultivated Michigan Soils. Applied and Environmental Microbiology. 70(1): 301-309 (2004).
- Wang, G., Gentry, T.J., Grass, G., Josephson, K., Rensing, C., Pepper, I.L. Real-Time PCR Quantification Of A Green Fluorescent Protein – Labeled, Genetically Engineered Pseudomonas putida Strain During 2-Chlorobenzonate Degradation In Soil. FEMS Microbiology Letters. 233(2): 307-314 (2004).
- Ahn, Y., Rhee, S., Fennell, D., Kerkhof, L., Hentschel, U., Haggblom, M. Reductive Dehalogenation Of Brominated Phenolic Compounds By Microorganisms Associated With The Marine Sponge Aplysina aerophoba. Applied and Environmental Microbiology. 69(7): 4159-4166 (2003).
- Atkins, S.D., Clark, I.M., Sosnowska, D., Hirsch, P.R., Kerry, B.R. Detection and Quantification Of Plectosphaerella cucumerina, A Potential Biological Control Agent Of Potato Cyst Nematodes, By Using Conventional PCR, Real-Time PCR, Selective Media, and Baiting. Applied and Environmental Microbiology. 69(8): 4788-4793 (2003).
- Atkins, S.D., Hidalgo-Diaz, L., Clark, I.M., Morton, C.O., Montes de Oca, N., Gray, P.A., Kerry, B.R. Approaches For Monitoring The Release Of Pochonia chlamydosporia var. catenulata, A Biocontrol Agent Of Root-Knot Nematodes. Mycological Research. 107(pt 2): 206-212 (2003).
- Bernot, M.J., Dodds, W.K., Gardner, W.S., McCarthy, M.J., Sobolev, D., Tank, J.L. Comparing Dentrification Estimates For A Texas Estuary By Using Acetylene Inhibition and Membrane Inlet Mass Spectrometry. Applied and Environmental Microbiology. 69(10): 5950-5956 (2003).
- Blackwood, C., Marsh, T., Kim, S., Paul, E. Terminal Restriction Fragment Length Polymorphism Data Analysis For Quantitative Comparison Of Microbial Communities. Applied and Environmental Microbiology. 69(2): 926-932 (2003).
- Blackwood, C.B., Paul, E.A. Eubacterial Community Structure and Population Size Within The Soil Light Fraction, Rhizosphere, and Heavy Fraction Of Several Agricultural Systems. Soil Biology & Biochemistry. 35(9): 1245-1255 (2003).
- Buchan, A., Newell, S.Y., Butler, M., Biers, E.J., Hollibaugh J.T., Moran, M.A. Dynamics Of Bacterial and Fungal Communities On Decaying Salt Marsh Grass. Applied and Environmental Microbiology. 69(11): 6676-6687 (2003).
- Christner, B.C, Kvitko, B.H., Reeve, J.N. Molecular Identification Of Bacteria and Eukarya Inhabiting An Antarctic Cryoconite Hole. Extremophiles. 7(3): 177-183 (2003).
- De Boer, W., Verheggen, P., Klein Gunnewiek, P., Kowalchuk, G., Van Veen, J. Microbial Community Composition Affects Soil Fungistasis. Applied and Environmental Microbiology. 69(2): 835-844 (2003).
- Dhillon, A., Teske, A., Dillon, J., Stahl, D., Sogin, M. Molecular Characterization Of Sulfate-Reducing Bacteria In The Guaymas Basin. Applied and Environmental Microbiology. 69(5): 2765-2772 (2003).
- Duan, Y.P., Castro, H., Hewlett, T., White, J., Ogram, A. Detection and characterization of Pasteuria 16S rRna Gene Sequences From Nematodes and Soils. International Journal of Systematic and Evolutionary Microbiology. 53(Pt 1): 105-112 (2003).
- Franklin, R.B., Mills, A.L. Multi-Scale Variation In Spatial Heterogeneity For Microbial Community Structure In An Eastern Virginia Agricultural Field. FEMS Microbiology Ecology. 44(3): 335-346 (2003).
- Gomes, N.C.M., Fagbola, O., Costa, R., Rumjanek, N.G., Buchner, A., Mendona-Hagler, L., Smalla, K. Dynamics Of Fungal Communities In Bulk and Maize Rhizosphere Soil In The Tropics. Applied and Environmental Microbiology. 69(7): 3758-3766 (2003).
- Inagaki, F, Suzuki, M., Takai, K., Oida, H., Sakamoto, T., Aoki, K., Nealson, K., Horikoshi, K. Microbial Communities Associated With Geological Horizons In Coastal Subseafloor Sediments From The Sea Of Okhotsk. Applied and Environmental Microbiology. 69(12): 7224-7235 (2003).
- Kormas, K., Smith, D., Edgcomb, V., Teske, A. Molecular Analysis Of Deep Subsurface Microbial Communities In Nankai Trough sediments (ODP Leg 190, Site 1176). FEMS Microbiology Ecology. 45(2): 115-125 (2003).
- Kowalchuk G.A., Van Os, G.J., van Aartrijk, J., van Veen, J.A. Microbial Community Responses To Disease Management Soil Treatments Used In Flower Bulb Cultivation. Biology & Fertility of Soils. 37(1): 55-63 (2003).
- Lendvay, J.M., Loffler, F.E., Dollhopf, M., Aiello, M.R, Daniels, G., Fathepure, B.Z., Gebhard, M., Heine, R., Helton, R., Shi, J., Krajmalnik-Brown, R., Major, C.L., Barcelona, M.J. Jr., Petrovskis, E., Hickey, R., Tiedje, J.M., Adriaens, P. Bioreactive Barriers: A Comparison Of Bioaugmentation and Biostimulation For Chlorinated Solvent Remediation. Environmental Science Technology. 37(7): 1422-1431 (2003).
- Lievens, B., Brouwer, M., Vanachter, A.C., Levesque, C.A., Cammue, B.P., Thomma, B.P. Design and Development Of A DNA Array For Rapid Detection and Identification Of Multiple Tomato Vascular Wilt Pathogens. FEMS Microbiology Letters. 223(1): 113-122 (2003).
- Litaker, R.W., Vandersea, M.W., Kibler, S.R., Reece, K.S., Stokes, N.A., Steidinger, K.A., Millie, D.F., Bendis, B.J., Pigg, R.J. Identification Of Pfiesteria piscicida (Dinophyceae) and Pfiesteria-Like Organisms Using Internal Transcribed Spacer-Specific Assays. Journal Phycology. 39(4): 754-761 (2003).
- Lyons, J.I., Newell, S.Y., Buchan, A., Moran, M.A. Diversity Of Ascomycete Laccase Gene Sequences In A Southeastern US Salt Marsh. Microbial Ecology. 45(3): 270-281 (2003).
- Mackie, R.I., Aminov, R.I., Hu, W., Klieve, A.V., Ouwerkerk, D., Sundset, M.A., Kamagata, Y. Ecology Of Uncultivated Oscillospira Species In The Rumen Of Cattle, Sheep and Reindeer As Assessed By Microscopy and Molecular Approaches. Applied and Environmental Microbiology. 69(11): 6808-6815 (2003).
- Mummey, D.L., Stahl, P.D. Spatial and Temporal Variability Of Bacterial 16S rDNA-Based T-RFLP Patterns Derived From Soil Of Two Wyoming Grassland Ecosystems. FEMS Microbiology Ecology. 46(1): 113-120 (2003).
- Mummey, D.L., Stahl, P.D. Candidate Division BD: Phylogeny, Distribution and Abundance In Soil Ecosystems. Systematic and Applied Microbiology. 26(2): 228-235 (2003).
- Nejstgaard, J.C., Frischer, M.E., Raule, C.L., Gruebel, R., Kohlberg, K.E., Verity, P.G. Molecular Detection Of Algal Prey In Copepod Guts and Fecal Pellets. Limnology and Oceanography: Methods. 1: 29-38 (2003).
- Nikolcheva, L., Cockshutt, A., Barlocher, F. Determining Diversity Of Freshwater Fungi On Decaying Leaves: Comparison Of Traditional and Molecular Approaches. Applied and Environmental Microbiology. 69(5): 2548-2554 (2003).
- Nour, S., Lawrence, J., Zhu, H., Swerhone, G., Welsh, M., Welacky, T., Topp, E. Bacteria Associated With Cysts Of The Soybean Cyst Nematode (Heterodera glycines). Applied and Environmental Microbiology. 69(1): 607-615 (2003).
- Olivera, N.L., Commendatore, M.G., Delgado, O., Esteves, J.L. Microbial Characterization and Hydrocarbon Biodegradation Potential Of Natural Bilge Waste Microflora. Journal of Industrial Microbiology and Biotechnology. 30(9): 542-548 (2003).
- Petrie, L., North, N.N., Dollhopf, S.L., Balkwill, D.L., Kostka, J.E. Enumeration and Characterization Of Iron(III)-Reducing Microbial Communities From Acidic Subsurface Sediments Contaminated With Uranium(VI). Applied and Environmental Microbiology. 69(12): 7467-7479 (2003).
- Radnedge, L., Agron, P., Hill, K., Jackson, P., Ticknor, L., Kleim, P., Andersen, G. Genome Differences That Distinguish Bacillus anthracis From Bacillus cereus and Bacillus thuringiensis. Applied and Environmental Microbiology. 69(5): 2755-2764 (2003).
- Rodriguez, R.A., Toranzos, G. Stability Of Bacterial Populations In Tropical Soil Upon Exposure To Lindane. International Microbiology. 6(4): 253-258 (2003).
- Schlesinger, W.H., Pippen, J.S., Wallenstein, M.D., Hofmockel, K.S., Klepeis, D.M., Mahall, B.E. Community Composition and Photosynthesis By Photoautotrophs Under Quartz Pebbles, Southern Mojave Desert. Ecology. 84(12): 3222-3231 (2003).
- Schonfeld, J., Heuer, H., van Elsas, J.D., Smalla, K. Specific and Sensitive Detection Of Ralstonia solanacearum In Soil On The Basis Of PCR Amplification Of fliC Fragments. Applied and Environmental Microbiology. 69(12): 7248-7256 (2003).
- Singh, B.K., Walker, A., Morgan, J.A.W., Wright, D.J. Effects Of Soil pH On The Biodegradation Of Chlorpyrifos and Isolation Of A Chlorpyrifos-Degrading Bacterium. Applied and Environmental Microbiology. 69(9): 5198-5206 (2003).
- Singh, B.K., Walker, A., Morgan, J.A.W., Wright, D.J. Role Of Soil pH In The Development Of Enhanced Biodegradation Of Fenamiphos. Applied and Environmental Microbiology. 69(12): 7035-7043 (2003).
- Smith, A., Imlay, J., Mackie, R. Increasing The Oxidative Stress Response Allows Escherichia coli To Overcome Inhibitory Effects Of Condensed Tannins. Applied and Environmental Microbiology. 69(6): 3406-3411 (2003).
- Stepanauskas, R., Moran, M.A., Bergamaschi, B.A., Hollibaugh, J.T. Covariance Of Bacterioplankton Composition and Environmental Variables In A Temperate delta System.Aquatic Microbial Ecology. 31(1): 85-98 (2003).
- Truu, J., Karme, L., Talpsep, E., Vedler, E., Heinaru, A. Phytoremediation Of Solid Oil Shale Waste From The Chemical Industry. Acta Biotechnology. 23(2-3): 301-307 (2003).
- Aminov, R.I., Chee-Sanford, J.C., Garrigues, N., Teferedegne, B., Krapac, I.J., White, B.A., Mackie, R.I. Development, Validation, and Application Of PCR Primers For Detection Of Tetracycline Efflux Genes Of Gram-Negative Bacteria. Applied and Environmental Microbiology. 68(4): 1786-1793 (2002).
- Castro, H., Reddy, K.R., Ogram, A. Composition and Function Of Sulfate-Reducing Prokaryotes In Eutrophic and Pristine Areas Of The Florida Everglades. Applied and Environmental Microbiology. 68(12): 6129-6137 (2002).
- Cho, J., Tiedje, J.M. Quantitative Detection Of Microbial Genes By Using DNA Microarrays. Applied and Environmental Microbiology. 68(3): 1425-1430 (2002).
- Galand, P.E., Saarnio, S., Fritze, H., Yrjala, K. Depth Related Diversity Of Methanogen Archaea In Finnish Oligotrophic Fen. FEMS Microbiology Ecology. 42(3): 441-449 (2002).
- Ibekwe, A.M., Watt, P., Grieve, C., Sharma, V., Lyons, S. Multiplex Fluorogenic Real-Time PCR For Detection and Quantification Of Escherichia coli O157:H7 In Dairy Wastewater Wetlands. Applied and Environmental Microbiology. 68(10): 4853-4862 (2002).
- Jordan, M., Sanchez, M.A., Padilla, L., Cespedes, R., Osses, M., Gonzales, B. Kraft Mill Residues Effects On Monterey Pine Growth and Soil Microbial Activity. Journal of Environmental Quality. 31(3): 1004-1009 (2002).
- Kostka, J., Dalton, D., Skelton, H., Dollhopf, S., Stucki, J. Growth Of Iron(III)-Reducing Bacteria On Clay Minerals As The Sole Electron Acceptor and Comparison Of Growth Yields On A Variety Of Oxidized Iron Forms. Applied and Environmental Microbiology. 68(12): 6256-6262 (2002).
- Kowalchuk, G.A., De Souza, F.A., Van Veen, J.A. Community Analysis Of Arbuscular Mycorrhizal Fungi Associated With Ammophila arenaria In Dutch Coastal Sand Dunes. Molecular Ecology. 11(3): 571-81 (2002).
- Kowalchuk, G.A., Buma, D.S., De Boer, W., Klinkhamer, P.G.L., Van Veen, J.A. Effects Of Above-Ground Plant Species Composition and Diversity On The Diversity Of Soil-Borne Microorganisms. Antonie van Leeuwenhoek. 81(1-4): 509-520 (2002).
- Mauchline, T.H., Kerry, B.R., Hirsch, P.R. Quantification In Soil and The Rhizosphere Of The Nematophagous Fungus Verticillium chlamydosporium By Competitive PCR and Comparison With Selective Plating. Applied and Environmental Microbiology. 68(4): 1846-1853 (2002).
- Pitulle, C., Strehse, D., Brown, J.W., Breitschwerdt, E.B. Investigation Of The Phylogenetic Relationships Within The Genus Bartonella Based On Comparative Sequence Analysis Of The rnpB Gene, 16S rDNA and 23S rDNA. International Journal of Systematic and Evolutionary Microbiology. 52(pt 6): 2075-2080 (2002).
- Prieme, A., Braker, G., Tiedje, J. Diversity Of Nitrite Reductase (nirK and nirS) Gene Fragments In Forested Upland and Wetland Soils. Applied and Environmental Microbiology. 68(4): 1893-1900 (2002).
- Reed, D.W., Fujita, Y., Delwiche, M.E., Blackwelder, D.B., Sheridan, P.P., Uchida, T., Colwell, F.S. Microbial Communities From Methane Hydrate-Bearing Deep Marine Sediments In A Forearc Basin. Applied and Environmental Microbiology. 68(8): 3579-3770 (2002).
- Rodrigues, J.L.M., Aiello, M.R., Urbance, J.W., Tsoi, T.V., Tiedje, J.M. Use Of Both 16S rRNA and Engineered Functional Genes With Real-Time PCR To Quantify An Engineered, PCB-Degrading Rhodococcus In Soil. Journal of Microbiological Methods. 51(2): 181-189 (2002).
- Salles, J., De Souza, F., Van Elsas, J. Molecular Method To Assess The Diversity Of Burkholderia Species In Environmental Samples. Applied and Environmental Microbiology. 68(4): 1595-1603 (2002).
- Tiquia, S.M., Lloyd, J., Herms, D.A., Hoitink, H.A.J., Michel, F.C. Effects Of Mulching and Fertilization On Soil Nutrients, Microbial Activity and Rhizosphere Bacterial Community Structure Determined By Analysis Of TRFLPs Of PCR-Amplified 16S rRNA Genes. Applied Soil Ecology. 21(1): 31-48 (2002).
- Aminov, R.I., Garrigues-Jeanjean, N., Mackie, R.I. Molecular Ecology Of Tetracycline Resistance: Development and Validation Of Primers For Detection Of Tetracycline Resistance Genes Encoding Ribosomal Protection Proteins. Applied and Environmental Microbiology. 67(1): 22-32 (2001).
- Gruntzig, V., Nold, S., Zhou, J., Tiedje, J.M. Pseudomonas stutzeri Nitrite Reductase Gene Abundance In Environmental Samples Measured By Real-Time PCR. Applied and Environmental Microbiology. 67(2): 760-768 (2001).
- Kaplan, C.W., Astaire, J.C., Sanders, M.L., Reddy, B.S., Kitts, C.L. 16S Ribosomal DNA Terminal Restriction Fragment Pattern Analysis Of Bacterial Communities In Feces Of Rats Fed Lactobacillus acidophilus NCFM. Applied and Environmental Microbiology. 67(4): 1935-1939 (2001).
- Niemi, R.M., Heiskanen, I., Wallenius, K., Lindstrom, K. Extraction and Purification Of DNA In Rhizosphere Soil Samples For PCR-DGGE Analysis Of Bacterial Consortia. Journal of Microbiological Methods. 45(3): 155-165 (2001).
- Rohwer, F., Breitbart, M., Jara, J., Azam, F., Knowlton, N. Diversity Of Bacteria Associated With The Caribbean Coral Montastraea franksi. Coral Reefs. 20: 85-91 (2001).
- Stults, J., Snoeyenbos-West, O., Methe, B., Lovley, D., Chandler, D. Application Of The 5 Fluorogenic Exonuclease Assay (TaqMan) For Quantitative Ribosomal DNA and rRNA Analysis In Sediments. Applied and Environmental Microbiology. 67(6): 2781-2789 (2001).
- Loffler, F.E., Sun, Q., Li, J., Tiedje, J.M. 16S rRNA Gene-Based Detection Of Tetrachloroethene-Dechlorinating Desulfuromonas and Dehalococcoides Species. Applied and Environmental Microbiology. 66(4): 1369-1374 (2000).
- Takai, K., Horikoshim, K. Rapid Detection and Quantification Of Members Of The Archaeal Community By Quantitative PCR Using Fluorogenic Probes. Applied and Environmental Microbiology. 66(11): 5066-5072 (2000).
- Tanner, M., Everett, C., Youvan, D. Molecular Phylogenetic Evidence For Noninvasive Zoonotic Transmission Of Staphylococcus intermedius From A Canine Pet To A Human. Journal of Clinical Microbiology. 38(4): 1628-1631 (2000).
- Braid, M.D., Nicholas, L.M., Clement, B.G., Kitner, J.B., Kitts, C.L., Brolaski, M.N., Venugopal, R.J. Testing The UltraClean Soil DNA Purification Kit On A Diverse Range Of Soils By PCR Amplification Of 16S rDNA. Poster Presentation at the American Society of Microbiology Meeting Chicago, Illinois. (1999).
- Ishii, S., Loynachan, T.E. Rapid and Reliable DNA Extraction Techniques From Trypan-Blue-Stained Mycorrhizal Roots: Comparison Of Two Methods. Mycorrhiza. 14(4): 271-275 (2004).
- Lu, J., Idris, U., Harmon, B., Hofacre, C., Maurer, J.J., Lee, M.D. Diversity and Succession Of The Intestinal Bacterial Community Of The Maturing Broiler Chicken. Applied and Environmental Microbiology. 69(11): 6816-6824 (2003).
- Beller, H.R., Kane, S.R., Legler, T.C., Alvarez, P.J. A Real-Time Polymerase Chain Reaction Method For Monitoring Anaerobic, Hydrocarbon-Degrading Bacteria Based On A Catabolic Gene. Environmental Science and Technology. 36(18): 3977-3894 (2002).
- Crump, B.C., Koch, E.W Attached Bacterial Populations Shared by Four Species of Aquatic Angiosperms. Applied and Enviromental Microbiologu. 74(19): 5948-5957 (2008).
- Li, J., Santo Somingo, J.W., Lamendella, R., Edge, T., Hill, S. Phylogenetic Diversity and Molecular Detection of Bacteria in Gull Feces. Applied and Environmental Microbiology. 74(13): 3969-3976 (2008).
- Stauffer, S.H., Birkenheuer, A.J., Levy, M.G., Marr, H., Gookin, J.L. Evaluation of Four DNA Extraction Methods for the Detection of Tritrichomonas foetus in Feline Stool Specimens by Polymerase Chain Reaction. Journal of Veterinary Diagnostic Investigation 20: 639-641 (2008).
- Watanabe, J., Nishimukai, M., Taguchi, H., Senoura, T., Hamada, S., Matsui, H., Yamamoto, T., Wasaki, J., Haea, H., and Ito, S. Prebiotic Preoperties of Epilactose. Journal of Dairy Science. 91:1, 4518-4526 (2008).
- Casper, R.M., Jarman, S.N., Deagle, B.E., Gales, N.J., Hindell, M.A. Detecting Prey From DNA In Predator Scats: A Comparison With Morphological Analysis, Using Arctocephalus Seals Fed a Known Diet. Journal of Experimental Marine BIology and Ecology. 347(1-2): 144 (2007).
- Casper, R.M., Jarman, S.N., Gales, N.J., Hindell, M.A. Combining DNA and Morphological Analyses Of Faecal Samples Improves Insight Into Trophic Interactions: A Case Study Using A Generalist Predator. Marine Biology. 152(4): 815-825 (2007).
- Hong, C., Decaro, N., Desario, D., Tanner, P., Pardo, M.C., Sanchez, S., Buonavoglia, C., Saliki, J.T. Occurrence Of Canine Parvovirus Type 2C In The United States. Journal of Veterinary Diagnostic Investigations. 19(5): 535-539 (2007).
- Wertz, J.T., Breznak, J.A. Physiological Ecology Of Stenoxybacter acetivorans, An Obligate Microaerophile In Termite Guts. Applied and Environmental Microbiology. 73(21): 6829-6841 (2007).
- Dumonceaux, T.J., Hill, J.E., Briggs, S.A., Amoakoa, K.K., Hemingsen, S.M., Van Kesse, A.G. Enumeration Of Specific Bacterial Populations In Complex Intestinal Communities Using Quantitative PCR Based On The Chaperonin-60 Target. Journal of Microbiological Methods. 64(1): 46-62 (2006).
- Stevenson, B.S., Eichorst, S.A., Wertz, J.T., Schmidt, T.M., Breznak, J.A. New Strategies For Cultivation and Detection Of Previously Uncultured Microbes. Applied and Environmental Microbiology. 70(8): 4748-4755 (2004).
- McGarvey, J.A., Miller, W.G., Sanchez, S., Stanker, L. Identification Of Bacterial Populations In Dairy Wastewaters By Use Of 16S rRNA Gene Sequences and Other Genetic Markers. Applied and Environmental Microbiology. 70(7): 4267-4275 (2004).
- Ibekwe, A.M., Grieve C,M., Lyon, S.R. Characterization Of Microbial Communities and Composition In Constructed Dairy Wetland Wastewater Effluent. Applied and Environmental Microbiology. 69(9): 5060-5069 (2003).
- Trochimchuk, T., Fotheringham, J., Topp, E., Schraft, H., Leung, K.T. A Comparison of DNA Extraction and Purification Methods To Detect Escherichia coli O157:H7 In Cattle Manure. Journal of Microbiological Methods. 54(2): 165-175 (2003).
- Ibekwe, A.M., Watt, P.M., Grieve, C.M., Sharma, V.K., Lyons, S.R. Multiplex Fluorogenic Real-Time PCR For Detection and Quantification Of Escherichia coli O157:H7 In Dairy Wastewater Wetlands. Applied and Environmental Microbiology. 68(10): 4853-4862 (2002).
- Clement, B.G., Kitts, C.L. Isolating PCR Quality DNA From Human Feces With A Soil DNA Kit. Biotechniques. 28(4): 640-642,644,646 (2000).
- Stewart, C. J., Nelson, A., Scribbins, D., Marrs, E. C. L., Lanyon, C., Perry, J. D.,Embleton N. D., Cummings S. P., Berrington, J. E. (2013). Bacterial and fungal viability in the preterm gut: NEC and sepsis. Archives of Disease in Childhood - Fetal and Neonatal Edition, doi: 10.1136/archdischild-2012-302119.
- Zhanbei Liang and Ann Keeley. Detection of Viable Cryptosporidium parvum in Soil by Reverse Transcription–Real-Time PCR Targeting hsp70 mRNA. Appl. Envir. Microbiol., Sep 2011; 77: 6476 - 6485.
- Accinelli, C., Abbas, H.K., Zablotowicz, R.M., Wilkinson, J.R. Aspergillus flavus Aflatoxin Occurrence and Expression Of Aflatoxin Biosynthesis Genes In Soil. Canadian Journal of Microbiology. 54(5): 371-379 (2008).
- Lee, P.K., Macbeth, T.W., Sorenson, K.S. Jr., Deeb, R.A., Alvarez-Cohen, L. Quantifying Genes and Transcripts To Assess The In Situ Physiology Of "Dehalococcoides" spp. In A Trichloroethene-Contaminated Groundwater Site. Applied and Environmental Microbiology. 74(9): 2728-2739 (2008).
- McGrath, K.C., Thomas-Hall, S.R., Cheng, C.T., Leo, L., ALexa, A., Schmidt, S., and Schenk, P.M. Isolation and Analysis of mRNA from Environmental Microbial Communities. Journal of Microbiological Methods. 75: 712-176 (2008).
- Pittman, G.W., Brumbley, S.M., Allsopp, P.G., O'Neill, S.L. Assessment Of Gut Bacteria For A Paratransgenic Approach To Control Dermolepida albohirtum Larvae. Applied and Environmental Microbiology. 74(13):4036-4043 (2008).
- Xing, D., Ren, N., Rittmann, B.E. Genetic Diversity Of Hydrogen-Producing Bacteria In An Acidophilic Ethanol-H2-Coproducing System, Analyzed Using The [Fe]-Hydrogenase Gene. Applied and Environmental Microbiology. 74(4): 1232-1239 (2008).
- Yu, Y.J., Majumdar, P.N., Nechvatal, J.M., Ram, J.L., Basson, M.D., Heilbrun, L.K., Kato, I. Exfoliated Cells in Stool: A Source for Reverse Transcription-PCR-Based Analysis of Biomarkers of Gastrointestinal Cancer. Cancer Epidemiol Biomarkers Prev. 17(2): 455-458 (2008).
- Amy Koid, William C. Nelson, Amy Mraz, and Karla B. Heidelberg. Comparative Analysis of Eukaryotic Marine Microbial Assemblages from 18S rRNA Gene and Gene Transcript Clone Libraries by Using Different Methods of Extraction. Appl. Envir. Microbiol., Jun 2012; 78: 3958 - 3965.
- Anna Rusznyák, Denise M. Akob, Sándor Nietzsche, Karin Eusterhues, Kai Uwe Totsche, Thomas R. Neu, Torsten Frosch, Jürgen Popp, Robert Keiner, Jörn Geletneky, Lutz Katzschmann, Ernst-Detlef Schulze, and Kirsten Küsel. Calcite Biomineralization by Bacterial Isolates from the Recently Discovered Pristine Karstic Herrenberg Cave. Appl. Envir. Microbiol., Feb 2012; 78: 1157 - 1167.
- Mueller-Spitz, S.R., Goetz, G.W., and McLellan S. Temporal and Spatial Varibility in Nearshore Bacterioplankton Communities of Lake Michigan. FEMS Microbiology Ecology. 67(3):511-522 (2009).
- Nieto, M.P., and Carbone, S.S. Characterization of Juvenile Maritime Pine (Pinus pinaster Ait.) Ectomycorrhizal Fungal Community Using morphotyping, Direct Sequencing and Fruitbodies Sampling. Mycorrhiza. 19(2): 91-98 (2009).
- Elshahed, M.S., Youssef, N.H., Spain, A.M., Sheik, C., Najar, F.Z., Sukharnikov, L.O., Roe, B.A., Davis, J.P., Schloss, P.D., Bailey, V.L., Krumholz, L.R. Novelty and Uniqueness Patterns Of Rare Members Of The Soil Biosphere. Applied and Environmental Microbiology. (2008).
- Andreote, F.D., Mendes, R., Dini-Andreote, F., Rossetto, P.B., Labate, C.A., Pizzirani-Kleiner, A.A., Van Elsas, J.D., Azevedo, J.L., Araújo, W.L. Transgenic Tobacco Revealing Altered Bacterial Diversity In The Rhizosphere During Early Plant Development. Antonie Van Leeuwenhoek. 93(4): 415-424 (2008).
- Floyd, A.L. Effects of Inundation Regime and Plant Community On Soil Bacterial Communities In An Eastern Shore, VA Salt Marsh. University of Virginia. (2007).
- Hawkins, I. Detecting Leptospira In Water: Evaluation Of a Proposed Method. University of Hawaii. (2007).
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